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A very simple, re-executable neuroimaging publication

Reproducible research is a key element of the scientific process. Re-executability of neuroimaging workflows that lead to the conclusions arrived at in the literature has not yet been sufficiently addressed and adopted by the neuroimaging community. In this paper, we document a set of procedures, wh...

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Autores principales: Ghosh, Satrajit S., Poline, Jean-Baptiste, Keator, David B., Halchenko, Yaroslav O., Thomas, Adam G., Kessler, Daniel A., Kennedy, David N.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: F1000Research 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5516225/
https://www.ncbi.nlm.nih.gov/pubmed/28781753
http://dx.doi.org/10.12688/f1000research.10783.2
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author Ghosh, Satrajit S.
Poline, Jean-Baptiste
Keator, David B.
Halchenko, Yaroslav O.
Thomas, Adam G.
Kessler, Daniel A.
Kennedy, David N.
author_facet Ghosh, Satrajit S.
Poline, Jean-Baptiste
Keator, David B.
Halchenko, Yaroslav O.
Thomas, Adam G.
Kessler, Daniel A.
Kennedy, David N.
author_sort Ghosh, Satrajit S.
collection PubMed
description Reproducible research is a key element of the scientific process. Re-executability of neuroimaging workflows that lead to the conclusions arrived at in the literature has not yet been sufficiently addressed and adopted by the neuroimaging community. In this paper, we document a set of procedures, which include supplemental additions to a manuscript, that unambiguously define the data, workflow, execution environment and results of a neuroimaging analysis, in order to generate a verifiable re-executable publication. Re-executability provides a starting point for examination of the generalizability and reproducibility of a given finding.
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spelling pubmed-55162252017-08-04 A very simple, re-executable neuroimaging publication Ghosh, Satrajit S. Poline, Jean-Baptiste Keator, David B. Halchenko, Yaroslav O. Thomas, Adam G. Kessler, Daniel A. Kennedy, David N. F1000Res Method Article Reproducible research is a key element of the scientific process. Re-executability of neuroimaging workflows that lead to the conclusions arrived at in the literature has not yet been sufficiently addressed and adopted by the neuroimaging community. In this paper, we document a set of procedures, which include supplemental additions to a manuscript, that unambiguously define the data, workflow, execution environment and results of a neuroimaging analysis, in order to generate a verifiable re-executable publication. Re-executability provides a starting point for examination of the generalizability and reproducibility of a given finding. F1000Research 2017-06-15 /pmc/articles/PMC5516225/ /pubmed/28781753 http://dx.doi.org/10.12688/f1000research.10783.2 Text en Copyright: © 2017 Ghosh SS et al. http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Method Article
Ghosh, Satrajit S.
Poline, Jean-Baptiste
Keator, David B.
Halchenko, Yaroslav O.
Thomas, Adam G.
Kessler, Daniel A.
Kennedy, David N.
A very simple, re-executable neuroimaging publication
title A very simple, re-executable neuroimaging publication
title_full A very simple, re-executable neuroimaging publication
title_fullStr A very simple, re-executable neuroimaging publication
title_full_unstemmed A very simple, re-executable neuroimaging publication
title_short A very simple, re-executable neuroimaging publication
title_sort very simple, re-executable neuroimaging publication
topic Method Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5516225/
https://www.ncbi.nlm.nih.gov/pubmed/28781753
http://dx.doi.org/10.12688/f1000research.10783.2
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