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Prebiotic selection for motifs in a model of template-free elongation of polymers within compartments

The transition from prelife where self-replication does not occur, to life which exhibits self-replication and evolution, has been a subject of interest for many decades. Membranes, forming compartments, seem to be a critical component of this transition as they provide several concurrent benefits....

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Autores principales: Kinsler, Grant, Sinai, Sam, Lee, Nicholas Keone, Nowak, Martin A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5516967/
https://www.ncbi.nlm.nih.gov/pubmed/28723913
http://dx.doi.org/10.1371/journal.pone.0180208
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author Kinsler, Grant
Sinai, Sam
Lee, Nicholas Keone
Nowak, Martin A.
author_facet Kinsler, Grant
Sinai, Sam
Lee, Nicholas Keone
Nowak, Martin A.
author_sort Kinsler, Grant
collection PubMed
description The transition from prelife where self-replication does not occur, to life which exhibits self-replication and evolution, has been a subject of interest for many decades. Membranes, forming compartments, seem to be a critical component of this transition as they provide several concurrent benefits. They maintain localized interactions, generate electro-chemical gradients, and help in selecting cooperative functions as they arise. These functions pave the way for the emergence and maintenance of simple metabolic cycles and polymers. In the context of origin of life, evolution of information-carrying molecules and RNA based enzymes within compartments has been subject to intensive theoretical and experimental research. Hence, many experimental efforts aim to produce compartments that contain elongating polynucleotides (also referred to as protocells), which store information and perform catalysis. Despite impressive experimental progress, we are still relatively ignorant about the dynamics by which elongating polynucleotides can produce more sophisticated behaviors. Here we perform computer simulations to couple information production through template-free elongation of polymers with dividing compartments. We find that polymers with a simple ability—biasing the concentration of monomers within their own compartment—can acquire a selective advantage in prelife. We further investigate whether such a mechanism allows for cooperative dynamics to dominate over purely competitive ones. We show that under this system of biased monomer addition, even without template-directed self-replication, genetic motifs can emerge, compete, cooperate, and ultimately survive within the population.
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spelling pubmed-55169672017-08-07 Prebiotic selection for motifs in a model of template-free elongation of polymers within compartments Kinsler, Grant Sinai, Sam Lee, Nicholas Keone Nowak, Martin A. PLoS One Research Article The transition from prelife where self-replication does not occur, to life which exhibits self-replication and evolution, has been a subject of interest for many decades. Membranes, forming compartments, seem to be a critical component of this transition as they provide several concurrent benefits. They maintain localized interactions, generate electro-chemical gradients, and help in selecting cooperative functions as they arise. These functions pave the way for the emergence and maintenance of simple metabolic cycles and polymers. In the context of origin of life, evolution of information-carrying molecules and RNA based enzymes within compartments has been subject to intensive theoretical and experimental research. Hence, many experimental efforts aim to produce compartments that contain elongating polynucleotides (also referred to as protocells), which store information and perform catalysis. Despite impressive experimental progress, we are still relatively ignorant about the dynamics by which elongating polynucleotides can produce more sophisticated behaviors. Here we perform computer simulations to couple information production through template-free elongation of polymers with dividing compartments. We find that polymers with a simple ability—biasing the concentration of monomers within their own compartment—can acquire a selective advantage in prelife. We further investigate whether such a mechanism allows for cooperative dynamics to dominate over purely competitive ones. We show that under this system of biased monomer addition, even without template-directed self-replication, genetic motifs can emerge, compete, cooperate, and ultimately survive within the population. Public Library of Science 2017-07-19 /pmc/articles/PMC5516967/ /pubmed/28723913 http://dx.doi.org/10.1371/journal.pone.0180208 Text en © 2017 Kinsler et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Kinsler, Grant
Sinai, Sam
Lee, Nicholas Keone
Nowak, Martin A.
Prebiotic selection for motifs in a model of template-free elongation of polymers within compartments
title Prebiotic selection for motifs in a model of template-free elongation of polymers within compartments
title_full Prebiotic selection for motifs in a model of template-free elongation of polymers within compartments
title_fullStr Prebiotic selection for motifs in a model of template-free elongation of polymers within compartments
title_full_unstemmed Prebiotic selection for motifs in a model of template-free elongation of polymers within compartments
title_short Prebiotic selection for motifs in a model of template-free elongation of polymers within compartments
title_sort prebiotic selection for motifs in a model of template-free elongation of polymers within compartments
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5516967/
https://www.ncbi.nlm.nih.gov/pubmed/28723913
http://dx.doi.org/10.1371/journal.pone.0180208
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