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DES-TOMATO: A Knowledge Exploration System Focused On Tomato Species

Tomato is the most economically important horticultural crop used as a model to study plant biology and particularly fruit development. Knowledge obtained from tomato research initiated improvements in tomato and, being transferrable to other such economically important crops, has led to a surge of...

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Autores principales: Salhi, Adil, Negrão, Sónia, Essack, Magbubah, Morton, Mitchell J. L., Bougouffa, Salim, Razali, Rozaimi, Radovanovic, Aleksandar, Marchand, Benoit, Kulmanov, Maxat, Hoehndorf, Robert, Tester, Mark, Bajic, Vladimir B.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5519719/
https://www.ncbi.nlm.nih.gov/pubmed/28729549
http://dx.doi.org/10.1038/s41598-017-05448-0
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author Salhi, Adil
Negrão, Sónia
Essack, Magbubah
Morton, Mitchell J. L.
Bougouffa, Salim
Razali, Rozaimi
Radovanovic, Aleksandar
Marchand, Benoit
Kulmanov, Maxat
Hoehndorf, Robert
Tester, Mark
Bajic, Vladimir B.
author_facet Salhi, Adil
Negrão, Sónia
Essack, Magbubah
Morton, Mitchell J. L.
Bougouffa, Salim
Razali, Rozaimi
Radovanovic, Aleksandar
Marchand, Benoit
Kulmanov, Maxat
Hoehndorf, Robert
Tester, Mark
Bajic, Vladimir B.
author_sort Salhi, Adil
collection PubMed
description Tomato is the most economically important horticultural crop used as a model to study plant biology and particularly fruit development. Knowledge obtained from tomato research initiated improvements in tomato and, being transferrable to other such economically important crops, has led to a surge of tomato-related research and published literature. We developed DES-TOMATO knowledgebase (KB) for exploration of information related to tomato. Information exploration is enabled through terms from 26 dictionaries and combination of these terms. To illustrate the utility of DES-TOMATO, we provide several examples how one can efficiently use this KB to retrieve known or potentially novel information. DES-TOMATO is free for academic and nonprofit users and can be accessed at http://cbrc.kaust.edu.sa/des_tomato/, using any of the mainstream web browsers, including Firefox, Safari and Chrome.
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spelling pubmed-55197192017-07-26 DES-TOMATO: A Knowledge Exploration System Focused On Tomato Species Salhi, Adil Negrão, Sónia Essack, Magbubah Morton, Mitchell J. L. Bougouffa, Salim Razali, Rozaimi Radovanovic, Aleksandar Marchand, Benoit Kulmanov, Maxat Hoehndorf, Robert Tester, Mark Bajic, Vladimir B. Sci Rep Article Tomato is the most economically important horticultural crop used as a model to study plant biology and particularly fruit development. Knowledge obtained from tomato research initiated improvements in tomato and, being transferrable to other such economically important crops, has led to a surge of tomato-related research and published literature. We developed DES-TOMATO knowledgebase (KB) for exploration of information related to tomato. Information exploration is enabled through terms from 26 dictionaries and combination of these terms. To illustrate the utility of DES-TOMATO, we provide several examples how one can efficiently use this KB to retrieve known or potentially novel information. DES-TOMATO is free for academic and nonprofit users and can be accessed at http://cbrc.kaust.edu.sa/des_tomato/, using any of the mainstream web browsers, including Firefox, Safari and Chrome. Nature Publishing Group UK 2017-07-20 /pmc/articles/PMC5519719/ /pubmed/28729549 http://dx.doi.org/10.1038/s41598-017-05448-0 Text en © The Author(s) 2017 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Salhi, Adil
Negrão, Sónia
Essack, Magbubah
Morton, Mitchell J. L.
Bougouffa, Salim
Razali, Rozaimi
Radovanovic, Aleksandar
Marchand, Benoit
Kulmanov, Maxat
Hoehndorf, Robert
Tester, Mark
Bajic, Vladimir B.
DES-TOMATO: A Knowledge Exploration System Focused On Tomato Species
title DES-TOMATO: A Knowledge Exploration System Focused On Tomato Species
title_full DES-TOMATO: A Knowledge Exploration System Focused On Tomato Species
title_fullStr DES-TOMATO: A Knowledge Exploration System Focused On Tomato Species
title_full_unstemmed DES-TOMATO: A Knowledge Exploration System Focused On Tomato Species
title_short DES-TOMATO: A Knowledge Exploration System Focused On Tomato Species
title_sort des-tomato: a knowledge exploration system focused on tomato species
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5519719/
https://www.ncbi.nlm.nih.gov/pubmed/28729549
http://dx.doi.org/10.1038/s41598-017-05448-0
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