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DES-TOMATO: A Knowledge Exploration System Focused On Tomato Species
Tomato is the most economically important horticultural crop used as a model to study plant biology and particularly fruit development. Knowledge obtained from tomato research initiated improvements in tomato and, being transferrable to other such economically important crops, has led to a surge of...
Autores principales: | , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5519719/ https://www.ncbi.nlm.nih.gov/pubmed/28729549 http://dx.doi.org/10.1038/s41598-017-05448-0 |
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author | Salhi, Adil Negrão, Sónia Essack, Magbubah Morton, Mitchell J. L. Bougouffa, Salim Razali, Rozaimi Radovanovic, Aleksandar Marchand, Benoit Kulmanov, Maxat Hoehndorf, Robert Tester, Mark Bajic, Vladimir B. |
author_facet | Salhi, Adil Negrão, Sónia Essack, Magbubah Morton, Mitchell J. L. Bougouffa, Salim Razali, Rozaimi Radovanovic, Aleksandar Marchand, Benoit Kulmanov, Maxat Hoehndorf, Robert Tester, Mark Bajic, Vladimir B. |
author_sort | Salhi, Adil |
collection | PubMed |
description | Tomato is the most economically important horticultural crop used as a model to study plant biology and particularly fruit development. Knowledge obtained from tomato research initiated improvements in tomato and, being transferrable to other such economically important crops, has led to a surge of tomato-related research and published literature. We developed DES-TOMATO knowledgebase (KB) for exploration of information related to tomato. Information exploration is enabled through terms from 26 dictionaries and combination of these terms. To illustrate the utility of DES-TOMATO, we provide several examples how one can efficiently use this KB to retrieve known or potentially novel information. DES-TOMATO is free for academic and nonprofit users and can be accessed at http://cbrc.kaust.edu.sa/des_tomato/, using any of the mainstream web browsers, including Firefox, Safari and Chrome. |
format | Online Article Text |
id | pubmed-5519719 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-55197192017-07-26 DES-TOMATO: A Knowledge Exploration System Focused On Tomato Species Salhi, Adil Negrão, Sónia Essack, Magbubah Morton, Mitchell J. L. Bougouffa, Salim Razali, Rozaimi Radovanovic, Aleksandar Marchand, Benoit Kulmanov, Maxat Hoehndorf, Robert Tester, Mark Bajic, Vladimir B. Sci Rep Article Tomato is the most economically important horticultural crop used as a model to study plant biology and particularly fruit development. Knowledge obtained from tomato research initiated improvements in tomato and, being transferrable to other such economically important crops, has led to a surge of tomato-related research and published literature. We developed DES-TOMATO knowledgebase (KB) for exploration of information related to tomato. Information exploration is enabled through terms from 26 dictionaries and combination of these terms. To illustrate the utility of DES-TOMATO, we provide several examples how one can efficiently use this KB to retrieve known or potentially novel information. DES-TOMATO is free for academic and nonprofit users and can be accessed at http://cbrc.kaust.edu.sa/des_tomato/, using any of the mainstream web browsers, including Firefox, Safari and Chrome. Nature Publishing Group UK 2017-07-20 /pmc/articles/PMC5519719/ /pubmed/28729549 http://dx.doi.org/10.1038/s41598-017-05448-0 Text en © The Author(s) 2017 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Salhi, Adil Negrão, Sónia Essack, Magbubah Morton, Mitchell J. L. Bougouffa, Salim Razali, Rozaimi Radovanovic, Aleksandar Marchand, Benoit Kulmanov, Maxat Hoehndorf, Robert Tester, Mark Bajic, Vladimir B. DES-TOMATO: A Knowledge Exploration System Focused On Tomato Species |
title | DES-TOMATO: A Knowledge Exploration System Focused On Tomato Species |
title_full | DES-TOMATO: A Knowledge Exploration System Focused On Tomato Species |
title_fullStr | DES-TOMATO: A Knowledge Exploration System Focused On Tomato Species |
title_full_unstemmed | DES-TOMATO: A Knowledge Exploration System Focused On Tomato Species |
title_short | DES-TOMATO: A Knowledge Exploration System Focused On Tomato Species |
title_sort | des-tomato: a knowledge exploration system focused on tomato species |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5519719/ https://www.ncbi.nlm.nih.gov/pubmed/28729549 http://dx.doi.org/10.1038/s41598-017-05448-0 |
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