Lung Gene Expression Analysis (LGEA): an integrative web portal for comprehensive gene expression data analysis in lung development

‘LungGENS’, our previously developed web tool for mapping single-cell gene expression in the developing lung, has been well received by the pulmonary research community. With continued support from the ‘LungMAP’ consortium, we extended the scope of the LungGENS database to accommodate transcriptomic...

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Autores principales: Du, Yina, Kitzmiller, Joseph A, Sridharan, Anusha, Perl, Anne K, Bridges, James P, Misra, Ravi S, Pryhuber, Gloria S, Mariani, Thomas J, Bhattacharya, Soumyaroop, Guo, Minzhe, Potter, S Steven, Dexheimer, Phillip, Aronow, Bruce, Jobe, Alan H, Whitsett, Jeffrey A, Xu, Yan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BMJ Publishing Group 2017
Materias:
Chest Clinic
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5520249/
https://www.ncbi.nlm.nih.gov/pubmed/28070014
http://dx.doi.org/10.1136/thoraxjnl-2016-209598
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author Du, Yina
Kitzmiller, Joseph A
Sridharan, Anusha
Perl, Anne K
Bridges, James P
Misra, Ravi S
Pryhuber, Gloria S
Mariani, Thomas J
Bhattacharya, Soumyaroop
Guo, Minzhe
Potter, S Steven
Dexheimer, Phillip
Aronow, Bruce
Jobe, Alan H
Whitsett, Jeffrey A
Xu, Yan
author_facet Du, Yina
Kitzmiller, Joseph A
Sridharan, Anusha
Perl, Anne K
Bridges, James P
Misra, Ravi S
Pryhuber, Gloria S
Mariani, Thomas J
Bhattacharya, Soumyaroop
Guo, Minzhe
Potter, S Steven
Dexheimer, Phillip
Aronow, Bruce
Jobe, Alan H
Whitsett, Jeffrey A
Xu, Yan
author_sort Du, Yina
collection PubMed
description ‘LungGENS’, our previously developed web tool for mapping single-cell gene expression in the developing lung, has been well received by the pulmonary research community. With continued support from the ‘LungMAP’ consortium, we extended the scope of the LungGENS database to accommodate transcriptomics data from pulmonary tissues and cells from human and mouse at different stages of lung development. Lung Gene Expression Analysis (LGEA) web portal is an extended version of LungGENS useful for the analysis, display and interpretation of gene expression patterns obtained from single cells, sorted cell populations and whole lung tissues. The LGEA web portal is freely available at http://research.cchmc.org/pbge/lunggens/mainportal.html.
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spelling pubmed-55202492017-07-31 Lung Gene Expression Analysis (LGEA): an integrative web portal for comprehensive gene expression data analysis in lung development Du, Yina Kitzmiller, Joseph A Sridharan, Anusha Perl, Anne K Bridges, James P Misra, Ravi S Pryhuber, Gloria S Mariani, Thomas J Bhattacharya, Soumyaroop Guo, Minzhe Potter, S Steven Dexheimer, Phillip Aronow, Bruce Jobe, Alan H Whitsett, Jeffrey A Xu, Yan Thorax Chest Clinic ‘LungGENS’, our previously developed web tool for mapping single-cell gene expression in the developing lung, has been well received by the pulmonary research community. With continued support from the ‘LungMAP’ consortium, we extended the scope of the LungGENS database to accommodate transcriptomics data from pulmonary tissues and cells from human and mouse at different stages of lung development. Lung Gene Expression Analysis (LGEA) web portal is an extended version of LungGENS useful for the analysis, display and interpretation of gene expression patterns obtained from single cells, sorted cell populations and whole lung tissues. The LGEA web portal is freely available at http://research.cchmc.org/pbge/lunggens/mainportal.html. BMJ Publishing Group 2017-05 2017-01-09 /pmc/articles/PMC5520249/ /pubmed/28070014 http://dx.doi.org/10.1136/thoraxjnl-2016-209598 Text en Published by the BMJ Publishing Group Limited. For permission to use (where not already granted under a licence) please go to http://www.bmj.com/company/products-services/rights-and-licensing/ This is an Open Access article distributed in accordance with the Creative Commons Attribution Non Commercial (CC BY-NC 4.0) license, which permits others to distribute, remix, adapt, build upon this work non-commercially, and license their derivative works on different terms, provided the original work is properly cited and the use is non-commercial. See: http://creativecommons.org/licenses/by-nc/4.0/
spellingShingle Chest Clinic
Du, Yina
Kitzmiller, Joseph A
Sridharan, Anusha
Perl, Anne K
Bridges, James P
Misra, Ravi S
Pryhuber, Gloria S
Mariani, Thomas J
Bhattacharya, Soumyaroop
Guo, Minzhe
Potter, S Steven
Dexheimer, Phillip
Aronow, Bruce
Jobe, Alan H
Whitsett, Jeffrey A
Xu, Yan
Lung Gene Expression Analysis (LGEA): an integrative web portal for comprehensive gene expression data analysis in lung development
title Lung Gene Expression Analysis (LGEA): an integrative web portal for comprehensive gene expression data analysis in lung development
title_full Lung Gene Expression Analysis (LGEA): an integrative web portal for comprehensive gene expression data analysis in lung development
title_fullStr Lung Gene Expression Analysis (LGEA): an integrative web portal for comprehensive gene expression data analysis in lung development
title_full_unstemmed Lung Gene Expression Analysis (LGEA): an integrative web portal for comprehensive gene expression data analysis in lung development
title_short Lung Gene Expression Analysis (LGEA): an integrative web portal for comprehensive gene expression data analysis in lung development
title_sort lung gene expression analysis (lgea): an integrative web portal for comprehensive gene expression data analysis in lung development
topic Chest Clinic
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5520249/
https://www.ncbi.nlm.nih.gov/pubmed/28070014
http://dx.doi.org/10.1136/thoraxjnl-2016-209598
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