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RNA-seq data from different developmental stages of Rafflesia cantleyi floral buds

Rafflesia cantleyi, known as one of the world's largest flowers, is a specialised holoparasite due to dramatic morphological modifications. It possesses highly reduced vegetative structure and only appears as a flower for sexual reproduction. Moreover, it has an unusual life cycle in that its f...

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Autores principales: Amini, Safoora, Alias, Halimah, Aizat-Juhari, Mohd Afiq, Mat-Isa, Mohd-Noor, Adam, Jumaat Haji, Goh, Hoe-Han, Wan, Kiew-Lian
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5524293/
https://www.ncbi.nlm.nih.gov/pubmed/28761813
http://dx.doi.org/10.1016/j.gdata.2017.07.008
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author Amini, Safoora
Alias, Halimah
Aizat-Juhari, Mohd Afiq
Mat-Isa, Mohd-Noor
Adam, Jumaat Haji
Goh, Hoe-Han
Wan, Kiew-Lian
author_facet Amini, Safoora
Alias, Halimah
Aizat-Juhari, Mohd Afiq
Mat-Isa, Mohd-Noor
Adam, Jumaat Haji
Goh, Hoe-Han
Wan, Kiew-Lian
author_sort Amini, Safoora
collection PubMed
description Rafflesia cantleyi, known as one of the world's largest flowers, is a specialised holoparasite due to dramatic morphological modifications. It possesses highly reduced vegetative structure and only appears as a flower for sexual reproduction. Moreover, it has an unusual life cycle in that its floral bud development takes up to nine months. In order to fully understand the highly modified floral organ structure and long life cycle of R. cantleyi, we used Illumina sequencing technology (HiSeq) for sequence generation followed by de novo assembly of sequence reads. We obtained the RNA-seq data from three different stages of floral bud, representing the early, mid and advanced developmental stages. These data are available via BioProject accession number PRJNA378435. More than 10.3 Gb raw sequence data were generated, corresponding to 102,203,042 raw reads. Following removal of low-quality reads and trimming of adapter sequences, a total of 91,638,836 reads were obtained. De novo assembly of these sequences using Trinity resulted in 89,690 unique transcripts with an N50 of 1653 bp. The obtained transcriptomic data will be useful for further study to understand the molecular interactions that result in R. cantleyi floral development.
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spelling pubmed-55242932017-07-31 RNA-seq data from different developmental stages of Rafflesia cantleyi floral buds Amini, Safoora Alias, Halimah Aizat-Juhari, Mohd Afiq Mat-Isa, Mohd-Noor Adam, Jumaat Haji Goh, Hoe-Han Wan, Kiew-Lian Genom Data Data in Brief Article Rafflesia cantleyi, known as one of the world's largest flowers, is a specialised holoparasite due to dramatic morphological modifications. It possesses highly reduced vegetative structure and only appears as a flower for sexual reproduction. Moreover, it has an unusual life cycle in that its floral bud development takes up to nine months. In order to fully understand the highly modified floral organ structure and long life cycle of R. cantleyi, we used Illumina sequencing technology (HiSeq) for sequence generation followed by de novo assembly of sequence reads. We obtained the RNA-seq data from three different stages of floral bud, representing the early, mid and advanced developmental stages. These data are available via BioProject accession number PRJNA378435. More than 10.3 Gb raw sequence data were generated, corresponding to 102,203,042 raw reads. Following removal of low-quality reads and trimming of adapter sequences, a total of 91,638,836 reads were obtained. De novo assembly of these sequences using Trinity resulted in 89,690 unique transcripts with an N50 of 1653 bp. The obtained transcriptomic data will be useful for further study to understand the molecular interactions that result in R. cantleyi floral development. Elsevier 2017-07-18 /pmc/articles/PMC5524293/ /pubmed/28761813 http://dx.doi.org/10.1016/j.gdata.2017.07.008 Text en © 2017 The Authors http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Data in Brief Article
Amini, Safoora
Alias, Halimah
Aizat-Juhari, Mohd Afiq
Mat-Isa, Mohd-Noor
Adam, Jumaat Haji
Goh, Hoe-Han
Wan, Kiew-Lian
RNA-seq data from different developmental stages of Rafflesia cantleyi floral buds
title RNA-seq data from different developmental stages of Rafflesia cantleyi floral buds
title_full RNA-seq data from different developmental stages of Rafflesia cantleyi floral buds
title_fullStr RNA-seq data from different developmental stages of Rafflesia cantleyi floral buds
title_full_unstemmed RNA-seq data from different developmental stages of Rafflesia cantleyi floral buds
title_short RNA-seq data from different developmental stages of Rafflesia cantleyi floral buds
title_sort rna-seq data from different developmental stages of rafflesia cantleyi floral buds
topic Data in Brief Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5524293/
https://www.ncbi.nlm.nih.gov/pubmed/28761813
http://dx.doi.org/10.1016/j.gdata.2017.07.008
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