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Hybrid modeling and prediction of dynamical systems
Scientific analysis often relies on the ability to make accurate predictions of a system’s dynamics. Mechanistic models, parameterized by a number of unknown parameters, are often used for this purpose. Accurate estimation of the model state and parameters prior to prediction is necessary, but may b...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5524426/ https://www.ncbi.nlm.nih.gov/pubmed/28692642 http://dx.doi.org/10.1371/journal.pcbi.1005655 |
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author | Hamilton, Franz Lloyd, Alun L. Flores, Kevin B. |
author_facet | Hamilton, Franz Lloyd, Alun L. Flores, Kevin B. |
author_sort | Hamilton, Franz |
collection | PubMed |
description | Scientific analysis often relies on the ability to make accurate predictions of a system’s dynamics. Mechanistic models, parameterized by a number of unknown parameters, are often used for this purpose. Accurate estimation of the model state and parameters prior to prediction is necessary, but may be complicated by issues such as noisy data and uncertainty in parameters and initial conditions. At the other end of the spectrum exist nonparametric methods, which rely solely on data to build their predictions. While these nonparametric methods do not require a model of the system, their performance is strongly influenced by the amount and noisiness of the data. In this article, we consider a hybrid approach to modeling and prediction which merges recent advancements in nonparametric analysis with standard parametric methods. The general idea is to replace a subset of a mechanistic model’s equations with their corresponding nonparametric representations, resulting in a hybrid modeling and prediction scheme. Overall, we find that this hybrid approach allows for more robust parameter estimation and improved short-term prediction in situations where there is a large uncertainty in model parameters. We demonstrate these advantages in the classical Lorenz-63 chaotic system and in networks of Hindmarsh-Rose neurons before application to experimentally collected structured population data. |
format | Online Article Text |
id | pubmed-5524426 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-55244262017-08-07 Hybrid modeling and prediction of dynamical systems Hamilton, Franz Lloyd, Alun L. Flores, Kevin B. PLoS Comput Biol Research Article Scientific analysis often relies on the ability to make accurate predictions of a system’s dynamics. Mechanistic models, parameterized by a number of unknown parameters, are often used for this purpose. Accurate estimation of the model state and parameters prior to prediction is necessary, but may be complicated by issues such as noisy data and uncertainty in parameters and initial conditions. At the other end of the spectrum exist nonparametric methods, which rely solely on data to build their predictions. While these nonparametric methods do not require a model of the system, their performance is strongly influenced by the amount and noisiness of the data. In this article, we consider a hybrid approach to modeling and prediction which merges recent advancements in nonparametric analysis with standard parametric methods. The general idea is to replace a subset of a mechanistic model’s equations with their corresponding nonparametric representations, resulting in a hybrid modeling and prediction scheme. Overall, we find that this hybrid approach allows for more robust parameter estimation and improved short-term prediction in situations where there is a large uncertainty in model parameters. We demonstrate these advantages in the classical Lorenz-63 chaotic system and in networks of Hindmarsh-Rose neurons before application to experimentally collected structured population data. Public Library of Science 2017-07-10 /pmc/articles/PMC5524426/ /pubmed/28692642 http://dx.doi.org/10.1371/journal.pcbi.1005655 Text en © 2017 Hamilton et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Hamilton, Franz Lloyd, Alun L. Flores, Kevin B. Hybrid modeling and prediction of dynamical systems |
title | Hybrid modeling and prediction of dynamical systems |
title_full | Hybrid modeling and prediction of dynamical systems |
title_fullStr | Hybrid modeling and prediction of dynamical systems |
title_full_unstemmed | Hybrid modeling and prediction of dynamical systems |
title_short | Hybrid modeling and prediction of dynamical systems |
title_sort | hybrid modeling and prediction of dynamical systems |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5524426/ https://www.ncbi.nlm.nih.gov/pubmed/28692642 http://dx.doi.org/10.1371/journal.pcbi.1005655 |
work_keys_str_mv | AT hamiltonfranz hybridmodelingandpredictionofdynamicalsystems AT lloydalunl hybridmodelingandpredictionofdynamicalsystems AT floreskevinb hybridmodelingandpredictionofdynamicalsystems |