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Hybrid modeling and prediction of dynamical systems

Scientific analysis often relies on the ability to make accurate predictions of a system’s dynamics. Mechanistic models, parameterized by a number of unknown parameters, are often used for this purpose. Accurate estimation of the model state and parameters prior to prediction is necessary, but may b...

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Detalles Bibliográficos
Autores principales: Hamilton, Franz, Lloyd, Alun L., Flores, Kevin B.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5524426/
https://www.ncbi.nlm.nih.gov/pubmed/28692642
http://dx.doi.org/10.1371/journal.pcbi.1005655
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author Hamilton, Franz
Lloyd, Alun L.
Flores, Kevin B.
author_facet Hamilton, Franz
Lloyd, Alun L.
Flores, Kevin B.
author_sort Hamilton, Franz
collection PubMed
description Scientific analysis often relies on the ability to make accurate predictions of a system’s dynamics. Mechanistic models, parameterized by a number of unknown parameters, are often used for this purpose. Accurate estimation of the model state and parameters prior to prediction is necessary, but may be complicated by issues such as noisy data and uncertainty in parameters and initial conditions. At the other end of the spectrum exist nonparametric methods, which rely solely on data to build their predictions. While these nonparametric methods do not require a model of the system, their performance is strongly influenced by the amount and noisiness of the data. In this article, we consider a hybrid approach to modeling and prediction which merges recent advancements in nonparametric analysis with standard parametric methods. The general idea is to replace a subset of a mechanistic model’s equations with their corresponding nonparametric representations, resulting in a hybrid modeling and prediction scheme. Overall, we find that this hybrid approach allows for more robust parameter estimation and improved short-term prediction in situations where there is a large uncertainty in model parameters. We demonstrate these advantages in the classical Lorenz-63 chaotic system and in networks of Hindmarsh-Rose neurons before application to experimentally collected structured population data.
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spelling pubmed-55244262017-08-07 Hybrid modeling and prediction of dynamical systems Hamilton, Franz Lloyd, Alun L. Flores, Kevin B. PLoS Comput Biol Research Article Scientific analysis often relies on the ability to make accurate predictions of a system’s dynamics. Mechanistic models, parameterized by a number of unknown parameters, are often used for this purpose. Accurate estimation of the model state and parameters prior to prediction is necessary, but may be complicated by issues such as noisy data and uncertainty in parameters and initial conditions. At the other end of the spectrum exist nonparametric methods, which rely solely on data to build their predictions. While these nonparametric methods do not require a model of the system, their performance is strongly influenced by the amount and noisiness of the data. In this article, we consider a hybrid approach to modeling and prediction which merges recent advancements in nonparametric analysis with standard parametric methods. The general idea is to replace a subset of a mechanistic model’s equations with their corresponding nonparametric representations, resulting in a hybrid modeling and prediction scheme. Overall, we find that this hybrid approach allows for more robust parameter estimation and improved short-term prediction in situations where there is a large uncertainty in model parameters. We demonstrate these advantages in the classical Lorenz-63 chaotic system and in networks of Hindmarsh-Rose neurons before application to experimentally collected structured population data. Public Library of Science 2017-07-10 /pmc/articles/PMC5524426/ /pubmed/28692642 http://dx.doi.org/10.1371/journal.pcbi.1005655 Text en © 2017 Hamilton et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Hamilton, Franz
Lloyd, Alun L.
Flores, Kevin B.
Hybrid modeling and prediction of dynamical systems
title Hybrid modeling and prediction of dynamical systems
title_full Hybrid modeling and prediction of dynamical systems
title_fullStr Hybrid modeling and prediction of dynamical systems
title_full_unstemmed Hybrid modeling and prediction of dynamical systems
title_short Hybrid modeling and prediction of dynamical systems
title_sort hybrid modeling and prediction of dynamical systems
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5524426/
https://www.ncbi.nlm.nih.gov/pubmed/28692642
http://dx.doi.org/10.1371/journal.pcbi.1005655
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