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First draft genome sequence of a strain from the genus Fusibacter isolated from Salar de Ascotán in Northern Chile
Fusibacter sp. 3D3 (ATCC BAA-2418) is an arsenate-reducing halotolerant strain within the Firmicutes phylum, isolated from the Salar de Ascotán, a hypersaline salt flat in Northern Chile. This high-Andean closed basin is an athalassohaline environment located at the bottom of a tectonic basin surrou...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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BioMed Central
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5525254/ https://www.ncbi.nlm.nih.gov/pubmed/28770028 http://dx.doi.org/10.1186/s40793-017-0252-4 |
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author | Serrano, Antonio E. Escudero, Lorena V. Tebes-Cayo, Cinthya Acosta, Mauricio Encalada, Olga Fernández-Moroso, Sebastián Demergasso, Cecilia |
author_facet | Serrano, Antonio E. Escudero, Lorena V. Tebes-Cayo, Cinthya Acosta, Mauricio Encalada, Olga Fernández-Moroso, Sebastián Demergasso, Cecilia |
author_sort | Serrano, Antonio E. |
collection | PubMed |
description | Fusibacter sp. 3D3 (ATCC BAA-2418) is an arsenate-reducing halotolerant strain within the Firmicutes phylum, isolated from the Salar de Ascotán, a hypersaline salt flat in Northern Chile. This high-Andean closed basin is an athalassohaline environment located at the bottom of a tectonic basin surrounded by mountain range, including some active volcanoes. This landscape can be an advantageous system to explore the effect of salinity on microorganisms that mediate biogeochemical reactions. Since 2000, microbial reduction of arsenic has been evidenced in the system, and the phylogenetic analysis of the original community plus the culture enrichments has revealed the predominance of Firmicutes phylum. Here, we describe the first whole draft genome sequence of an arsenic-reducing strain belonging to the Fusibacter genus showing the highest 16S rRNA gene sequence similarity (98%) with Fusibacter sp. strain Vns02. The draft genome consists of 57 contigs with 5,111,250 bp and an average G + C content of 37.6%. Out of 4780 total genes predicted, 4700 genes code for proteins and 80 genes for RNAs. Insights from the genome sequence and some microbiological features of the strain 3D3 are available under Bioproject accession PRJDB4973 and Biosample SAMD00055724. The release of the genome sequence of this strain could contribute to the understanding of the arsenic biogeochemistry in extreme environments. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s40793-017-0252-4) contains supplementary material, which is available to authorized users. |
format | Online Article Text |
id | pubmed-5525254 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-55252542017-08-02 First draft genome sequence of a strain from the genus Fusibacter isolated from Salar de Ascotán in Northern Chile Serrano, Antonio E. Escudero, Lorena V. Tebes-Cayo, Cinthya Acosta, Mauricio Encalada, Olga Fernández-Moroso, Sebastián Demergasso, Cecilia Stand Genomic Sci Extended Genome Report Fusibacter sp. 3D3 (ATCC BAA-2418) is an arsenate-reducing halotolerant strain within the Firmicutes phylum, isolated from the Salar de Ascotán, a hypersaline salt flat in Northern Chile. This high-Andean closed basin is an athalassohaline environment located at the bottom of a tectonic basin surrounded by mountain range, including some active volcanoes. This landscape can be an advantageous system to explore the effect of salinity on microorganisms that mediate biogeochemical reactions. Since 2000, microbial reduction of arsenic has been evidenced in the system, and the phylogenetic analysis of the original community plus the culture enrichments has revealed the predominance of Firmicutes phylum. Here, we describe the first whole draft genome sequence of an arsenic-reducing strain belonging to the Fusibacter genus showing the highest 16S rRNA gene sequence similarity (98%) with Fusibacter sp. strain Vns02. The draft genome consists of 57 contigs with 5,111,250 bp and an average G + C content of 37.6%. Out of 4780 total genes predicted, 4700 genes code for proteins and 80 genes for RNAs. Insights from the genome sequence and some microbiological features of the strain 3D3 are available under Bioproject accession PRJDB4973 and Biosample SAMD00055724. The release of the genome sequence of this strain could contribute to the understanding of the arsenic biogeochemistry in extreme environments. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s40793-017-0252-4) contains supplementary material, which is available to authorized users. BioMed Central 2017-07-24 /pmc/articles/PMC5525254/ /pubmed/28770028 http://dx.doi.org/10.1186/s40793-017-0252-4 Text en © The Author(s). 2017 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Extended Genome Report Serrano, Antonio E. Escudero, Lorena V. Tebes-Cayo, Cinthya Acosta, Mauricio Encalada, Olga Fernández-Moroso, Sebastián Demergasso, Cecilia First draft genome sequence of a strain from the genus Fusibacter isolated from Salar de Ascotán in Northern Chile |
title | First draft genome sequence of a strain from the genus Fusibacter isolated from Salar de Ascotán in Northern Chile |
title_full | First draft genome sequence of a strain from the genus Fusibacter isolated from Salar de Ascotán in Northern Chile |
title_fullStr | First draft genome sequence of a strain from the genus Fusibacter isolated from Salar de Ascotán in Northern Chile |
title_full_unstemmed | First draft genome sequence of a strain from the genus Fusibacter isolated from Salar de Ascotán in Northern Chile |
title_short | First draft genome sequence of a strain from the genus Fusibacter isolated from Salar de Ascotán in Northern Chile |
title_sort | first draft genome sequence of a strain from the genus fusibacter isolated from salar de ascotán in northern chile |
topic | Extended Genome Report |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5525254/ https://www.ncbi.nlm.nih.gov/pubmed/28770028 http://dx.doi.org/10.1186/s40793-017-0252-4 |
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