Cargando…

A metagenomic survey of forest soil microbial communities more than a decade after timber harvesting

The scarcity of long-term data on soil microbial communities in the decades following timber harvesting limits current understanding of the ecological problems associated with maintaining the productivity of managed forests. The high complexity of soil communities and the heterogeneity of forest and...

Descripción completa

Detalles Bibliográficos
Autores principales: Wilhelm, Roland C., Cardenas, Erick, Leung, Hilary, Maas, Kendra, Hartmann, Martin, Hahn, Aria, Hallam, Steven, Mohn, William W.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5525643/
https://www.ncbi.nlm.nih.gov/pubmed/28765786
http://dx.doi.org/10.1038/sdata.2017.92
_version_ 1783252676190928896
author Wilhelm, Roland C.
Cardenas, Erick
Leung, Hilary
Maas, Kendra
Hartmann, Martin
Hahn, Aria
Hallam, Steven
Mohn, William W.
author_facet Wilhelm, Roland C.
Cardenas, Erick
Leung, Hilary
Maas, Kendra
Hartmann, Martin
Hahn, Aria
Hallam, Steven
Mohn, William W.
author_sort Wilhelm, Roland C.
collection PubMed
description The scarcity of long-term data on soil microbial communities in the decades following timber harvesting limits current understanding of the ecological problems associated with maintaining the productivity of managed forests. The high complexity of soil communities and the heterogeneity of forest and soil necessitates a comprehensive approach to understand the role of microbial processes in managed forest ecosystems. Here, we describe a curated collection of well replicated, multi-faceted data from eighteen reforested sites in six different North American ecozones within the Long-term Soil Productivity (LTSP) Study, without detailed analysis of results or discussion. The experiments were designed to contrast microbial community composition and function among forest soils from harvested treatment plots with varying intensities of organic matter removal. The collection includes 724 bacterial (16S) and 658 fungal (ITS2) amplicon libraries, 133 shotgun metagenomic libraries as well as stable isotope probing amplicon libraries capturing the effects of harvesting on hemicellulolytic and cellulolytic populations. This collection serves as a foundation for the LTSP Study and other studies of the ecology of forest soil and forest disturbance.
format Online
Article
Text
id pubmed-5525643
institution National Center for Biotechnology Information
language English
publishDate 2017
publisher Nature Publishing Group
record_format MEDLINE/PubMed
spelling pubmed-55256432017-08-01 A metagenomic survey of forest soil microbial communities more than a decade after timber harvesting Wilhelm, Roland C. Cardenas, Erick Leung, Hilary Maas, Kendra Hartmann, Martin Hahn, Aria Hallam, Steven Mohn, William W. Sci Data Data Descriptor The scarcity of long-term data on soil microbial communities in the decades following timber harvesting limits current understanding of the ecological problems associated with maintaining the productivity of managed forests. The high complexity of soil communities and the heterogeneity of forest and soil necessitates a comprehensive approach to understand the role of microbial processes in managed forest ecosystems. Here, we describe a curated collection of well replicated, multi-faceted data from eighteen reforested sites in six different North American ecozones within the Long-term Soil Productivity (LTSP) Study, without detailed analysis of results or discussion. The experiments were designed to contrast microbial community composition and function among forest soils from harvested treatment plots with varying intensities of organic matter removal. The collection includes 724 bacterial (16S) and 658 fungal (ITS2) amplicon libraries, 133 shotgun metagenomic libraries as well as stable isotope probing amplicon libraries capturing the effects of harvesting on hemicellulolytic and cellulolytic populations. This collection serves as a foundation for the LTSP Study and other studies of the ecology of forest soil and forest disturbance. Nature Publishing Group 2017-07-25 /pmc/articles/PMC5525643/ /pubmed/28765786 http://dx.doi.org/10.1038/sdata.2017.92 Text en Copyright © 2017, The Author(s) http://creativecommons.org/licenses/by/4.0/ Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ The Creative Commons Public Domain Dedication waiver http://creativecommons.org/publicdomain/zero/1.0/ applies to the metadata files made available in this article.
spellingShingle Data Descriptor
Wilhelm, Roland C.
Cardenas, Erick
Leung, Hilary
Maas, Kendra
Hartmann, Martin
Hahn, Aria
Hallam, Steven
Mohn, William W.
A metagenomic survey of forest soil microbial communities more than a decade after timber harvesting
title A metagenomic survey of forest soil microbial communities more than a decade after timber harvesting
title_full A metagenomic survey of forest soil microbial communities more than a decade after timber harvesting
title_fullStr A metagenomic survey of forest soil microbial communities more than a decade after timber harvesting
title_full_unstemmed A metagenomic survey of forest soil microbial communities more than a decade after timber harvesting
title_short A metagenomic survey of forest soil microbial communities more than a decade after timber harvesting
title_sort metagenomic survey of forest soil microbial communities more than a decade after timber harvesting
topic Data Descriptor
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5525643/
https://www.ncbi.nlm.nih.gov/pubmed/28765786
http://dx.doi.org/10.1038/sdata.2017.92
work_keys_str_mv AT wilhelmrolandc ametagenomicsurveyofforestsoilmicrobialcommunitiesmorethanadecadeaftertimberharvesting
AT cardenaserick ametagenomicsurveyofforestsoilmicrobialcommunitiesmorethanadecadeaftertimberharvesting
AT leunghilary ametagenomicsurveyofforestsoilmicrobialcommunitiesmorethanadecadeaftertimberharvesting
AT maaskendra ametagenomicsurveyofforestsoilmicrobialcommunitiesmorethanadecadeaftertimberharvesting
AT hartmannmartin ametagenomicsurveyofforestsoilmicrobialcommunitiesmorethanadecadeaftertimberharvesting
AT hahnaria ametagenomicsurveyofforestsoilmicrobialcommunitiesmorethanadecadeaftertimberharvesting
AT hallamsteven ametagenomicsurveyofforestsoilmicrobialcommunitiesmorethanadecadeaftertimberharvesting
AT mohnwilliamw ametagenomicsurveyofforestsoilmicrobialcommunitiesmorethanadecadeaftertimberharvesting
AT wilhelmrolandc metagenomicsurveyofforestsoilmicrobialcommunitiesmorethanadecadeaftertimberharvesting
AT cardenaserick metagenomicsurveyofforestsoilmicrobialcommunitiesmorethanadecadeaftertimberharvesting
AT leunghilary metagenomicsurveyofforestsoilmicrobialcommunitiesmorethanadecadeaftertimberharvesting
AT maaskendra metagenomicsurveyofforestsoilmicrobialcommunitiesmorethanadecadeaftertimberharvesting
AT hartmannmartin metagenomicsurveyofforestsoilmicrobialcommunitiesmorethanadecadeaftertimberharvesting
AT hahnaria metagenomicsurveyofforestsoilmicrobialcommunitiesmorethanadecadeaftertimberharvesting
AT hallamsteven metagenomicsurveyofforestsoilmicrobialcommunitiesmorethanadecadeaftertimberharvesting
AT mohnwilliamw metagenomicsurveyofforestsoilmicrobialcommunitiesmorethanadecadeaftertimberharvesting