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A metagenomic survey of forest soil microbial communities more than a decade after timber harvesting
The scarcity of long-term data on soil microbial communities in the decades following timber harvesting limits current understanding of the ecological problems associated with maintaining the productivity of managed forests. The high complexity of soil communities and the heterogeneity of forest and...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5525643/ https://www.ncbi.nlm.nih.gov/pubmed/28765786 http://dx.doi.org/10.1038/sdata.2017.92 |
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author | Wilhelm, Roland C. Cardenas, Erick Leung, Hilary Maas, Kendra Hartmann, Martin Hahn, Aria Hallam, Steven Mohn, William W. |
author_facet | Wilhelm, Roland C. Cardenas, Erick Leung, Hilary Maas, Kendra Hartmann, Martin Hahn, Aria Hallam, Steven Mohn, William W. |
author_sort | Wilhelm, Roland C. |
collection | PubMed |
description | The scarcity of long-term data on soil microbial communities in the decades following timber harvesting limits current understanding of the ecological problems associated with maintaining the productivity of managed forests. The high complexity of soil communities and the heterogeneity of forest and soil necessitates a comprehensive approach to understand the role of microbial processes in managed forest ecosystems. Here, we describe a curated collection of well replicated, multi-faceted data from eighteen reforested sites in six different North American ecozones within the Long-term Soil Productivity (LTSP) Study, without detailed analysis of results or discussion. The experiments were designed to contrast microbial community composition and function among forest soils from harvested treatment plots with varying intensities of organic matter removal. The collection includes 724 bacterial (16S) and 658 fungal (ITS2) amplicon libraries, 133 shotgun metagenomic libraries as well as stable isotope probing amplicon libraries capturing the effects of harvesting on hemicellulolytic and cellulolytic populations. This collection serves as a foundation for the LTSP Study and other studies of the ecology of forest soil and forest disturbance. |
format | Online Article Text |
id | pubmed-5525643 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Nature Publishing Group |
record_format | MEDLINE/PubMed |
spelling | pubmed-55256432017-08-01 A metagenomic survey of forest soil microbial communities more than a decade after timber harvesting Wilhelm, Roland C. Cardenas, Erick Leung, Hilary Maas, Kendra Hartmann, Martin Hahn, Aria Hallam, Steven Mohn, William W. Sci Data Data Descriptor The scarcity of long-term data on soil microbial communities in the decades following timber harvesting limits current understanding of the ecological problems associated with maintaining the productivity of managed forests. The high complexity of soil communities and the heterogeneity of forest and soil necessitates a comprehensive approach to understand the role of microbial processes in managed forest ecosystems. Here, we describe a curated collection of well replicated, multi-faceted data from eighteen reforested sites in six different North American ecozones within the Long-term Soil Productivity (LTSP) Study, without detailed analysis of results or discussion. The experiments were designed to contrast microbial community composition and function among forest soils from harvested treatment plots with varying intensities of organic matter removal. The collection includes 724 bacterial (16S) and 658 fungal (ITS2) amplicon libraries, 133 shotgun metagenomic libraries as well as stable isotope probing amplicon libraries capturing the effects of harvesting on hemicellulolytic and cellulolytic populations. This collection serves as a foundation for the LTSP Study and other studies of the ecology of forest soil and forest disturbance. Nature Publishing Group 2017-07-25 /pmc/articles/PMC5525643/ /pubmed/28765786 http://dx.doi.org/10.1038/sdata.2017.92 Text en Copyright © 2017, The Author(s) http://creativecommons.org/licenses/by/4.0/ Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ The Creative Commons Public Domain Dedication waiver http://creativecommons.org/publicdomain/zero/1.0/ applies to the metadata files made available in this article. |
spellingShingle | Data Descriptor Wilhelm, Roland C. Cardenas, Erick Leung, Hilary Maas, Kendra Hartmann, Martin Hahn, Aria Hallam, Steven Mohn, William W. A metagenomic survey of forest soil microbial communities more than a decade after timber harvesting |
title | A metagenomic survey of forest soil microbial communities more than a decade after timber harvesting |
title_full | A metagenomic survey of forest soil microbial communities more than a decade after timber harvesting |
title_fullStr | A metagenomic survey of forest soil microbial communities more than a decade after timber harvesting |
title_full_unstemmed | A metagenomic survey of forest soil microbial communities more than a decade after timber harvesting |
title_short | A metagenomic survey of forest soil microbial communities more than a decade after timber harvesting |
title_sort | metagenomic survey of forest soil microbial communities more than a decade after timber harvesting |
topic | Data Descriptor |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5525643/ https://www.ncbi.nlm.nih.gov/pubmed/28765786 http://dx.doi.org/10.1038/sdata.2017.92 |
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