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Evaluation of K-ras and p53 expression in pancreatic adenocarcinoma using the cancer genome atlas

Genetic alterations in K-ras and p53 are thought to be critical in pancreatic cancer development and progression. However, K-ras and p53 expression in pancreatic adenocarcinoma have not been systematically examined in The Cancer Genome Atlas (TCGA) Data Portal. Information regarding K-ras and p53 al...

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Autores principales: Lu, Liming, Zeng, Jingchun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5526503/
https://www.ncbi.nlm.nih.gov/pubmed/28742845
http://dx.doi.org/10.1371/journal.pone.0181532
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author Lu, Liming
Zeng, Jingchun
author_facet Lu, Liming
Zeng, Jingchun
author_sort Lu, Liming
collection PubMed
description Genetic alterations in K-ras and p53 are thought to be critical in pancreatic cancer development and progression. However, K-ras and p53 expression in pancreatic adenocarcinoma have not been systematically examined in The Cancer Genome Atlas (TCGA) Data Portal. Information regarding K-ras and p53 alterations, mRNA expression data, and protein/protein phosphorylation abundance was retrieved from The Cancer Genome Atlas (TCGA) databases, and analyses were performed by the cBioPortal for Cancer Genomics. The mutual exclusivity analysis showed that events in K-ras and p53 were likely to co-occur in pancreatic adenocarcinoma (Log odds ratio = 1.599, P = 0.006). The graphical summary of the mutations showed that there were hotspots for protein activation. In the network analysis, no solid association between K-ras and p53 was observed in pancreatic adenocarcinoma. In the survival analysis, neither K-ras nor p53 were associated with both survival events. As in the data mining study in the TCGA databases, our study provides a new perspective to understand the genetic features of K-ras and p53 in pancreatic adenocarcinoma.
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spelling pubmed-55265032017-08-07 Evaluation of K-ras and p53 expression in pancreatic adenocarcinoma using the cancer genome atlas Lu, Liming Zeng, Jingchun PLoS One Research Article Genetic alterations in K-ras and p53 are thought to be critical in pancreatic cancer development and progression. However, K-ras and p53 expression in pancreatic adenocarcinoma have not been systematically examined in The Cancer Genome Atlas (TCGA) Data Portal. Information regarding K-ras and p53 alterations, mRNA expression data, and protein/protein phosphorylation abundance was retrieved from The Cancer Genome Atlas (TCGA) databases, and analyses were performed by the cBioPortal for Cancer Genomics. The mutual exclusivity analysis showed that events in K-ras and p53 were likely to co-occur in pancreatic adenocarcinoma (Log odds ratio = 1.599, P = 0.006). The graphical summary of the mutations showed that there were hotspots for protein activation. In the network analysis, no solid association between K-ras and p53 was observed in pancreatic adenocarcinoma. In the survival analysis, neither K-ras nor p53 were associated with both survival events. As in the data mining study in the TCGA databases, our study provides a new perspective to understand the genetic features of K-ras and p53 in pancreatic adenocarcinoma. Public Library of Science 2017-07-25 /pmc/articles/PMC5526503/ /pubmed/28742845 http://dx.doi.org/10.1371/journal.pone.0181532 Text en © 2017 Lu, Zeng http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Lu, Liming
Zeng, Jingchun
Evaluation of K-ras and p53 expression in pancreatic adenocarcinoma using the cancer genome atlas
title Evaluation of K-ras and p53 expression in pancreatic adenocarcinoma using the cancer genome atlas
title_full Evaluation of K-ras and p53 expression in pancreatic adenocarcinoma using the cancer genome atlas
title_fullStr Evaluation of K-ras and p53 expression in pancreatic adenocarcinoma using the cancer genome atlas
title_full_unstemmed Evaluation of K-ras and p53 expression in pancreatic adenocarcinoma using the cancer genome atlas
title_short Evaluation of K-ras and p53 expression in pancreatic adenocarcinoma using the cancer genome atlas
title_sort evaluation of k-ras and p53 expression in pancreatic adenocarcinoma using the cancer genome atlas
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5526503/
https://www.ncbi.nlm.nih.gov/pubmed/28742845
http://dx.doi.org/10.1371/journal.pone.0181532
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