Proteogenomics data for deciphering Frankia coriariae interactions with root exudates from three host plants()

Frankia coriariae BMG5.1 cells were incubated with root exudates derived from compatible (Coriaria myrtifolia), incompatible (Alnus glutinosa) and non-actinorhizal (Cucumis melo) host plants. Bacteria cells and their exoproteomes were analyzed by high-throughput proteomics using a Q-Exactive HF high...

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Detalles Bibliográficos
Autores principales: Miotello, Guylaine, Ktari, Amir, Gueddou, Abdellatif, Nouioui, Imen, Ghodhbane-Gtari, Faten, Armengaud, Jean, Gtari, Maher
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2017
Materias:
Immunology and Microbiology
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5526514/
https://www.ncbi.nlm.nih.gov/pubmed/28765834
http://dx.doi.org/10.1016/j.dib.2017.07.009
Descripción
Sumario:Frankia coriariae BMG5.1 cells were incubated with root exudates derived from compatible (Coriaria myrtifolia), incompatible (Alnus glutinosa) and non-actinorhizal (Cucumis melo) host plants. Bacteria cells and their exoproteomes were analyzed by high-throughput proteomics using a Q-Exactive HF high resolution tandem mass spectrometer incorporating an ultra-high-field orbitrap analyzer. MS/MS spectra were assigned with two protein sequence databases derived from the closely-related genomes from strains BMG5.1 andDg1, the Frankia symbiont of Datisca glomerata. The tandem mass spectrometry data accompanying the manuscript describing the database searches and comparative analysis (Ktari et al., 2017, doi.org/10.3389/fmicb.2017.00720) [1] have been deposited to the ProteomeXchange with identifiers PXD005979 (whole cell proteomes) and PXD005980 (exoproteome data).

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