Proteogenomics data for deciphering Frankia coriariae interactions with root exudates from three host plants()

Frankia coriariae BMG5.1 cells were incubated with root exudates derived from compatible (Coriaria myrtifolia), incompatible (Alnus glutinosa) and non-actinorhizal (Cucumis melo) host plants. Bacteria cells and their exoproteomes were analyzed by high-throughput proteomics using a Q-Exactive HF high...

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Autores principales: Miotello, Guylaine, Ktari, Amir, Gueddou, Abdellatif, Nouioui, Imen, Ghodhbane-Gtari, Faten, Armengaud, Jean, Gtari, Maher
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2017
Materias:
Immunology and Microbiology
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5526514/
https://www.ncbi.nlm.nih.gov/pubmed/28765834
http://dx.doi.org/10.1016/j.dib.2017.07.009
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author Miotello, Guylaine
Ktari, Amir
Gueddou, Abdellatif
Nouioui, Imen
Ghodhbane-Gtari, Faten
Armengaud, Jean
Gtari, Maher
author_facet Miotello, Guylaine
Ktari, Amir
Gueddou, Abdellatif
Nouioui, Imen
Ghodhbane-Gtari, Faten
Armengaud, Jean
Gtari, Maher
author_sort Miotello, Guylaine
collection PubMed
description Frankia coriariae BMG5.1 cells were incubated with root exudates derived from compatible (Coriaria myrtifolia), incompatible (Alnus glutinosa) and non-actinorhizal (Cucumis melo) host plants. Bacteria cells and their exoproteomes were analyzed by high-throughput proteomics using a Q-Exactive HF high resolution tandem mass spectrometer incorporating an ultra-high-field orbitrap analyzer. MS/MS spectra were assigned with two protein sequence databases derived from the closely-related genomes from strains BMG5.1 andDg1, the Frankia symbiont of Datisca glomerata. The tandem mass spectrometry data accompanying the manuscript describing the database searches and comparative analysis (Ktari et al., 2017, doi.org/10.3389/fmicb.2017.00720) [1] have been deposited to the ProteomeXchange with identifiers PXD005979 (whole cell proteomes) and PXD005980 (exoproteome data).
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spelling pubmed-55265142017-08-01 Proteogenomics data for deciphering Frankia coriariae interactions with root exudates from three host plants() Miotello, Guylaine Ktari, Amir Gueddou, Abdellatif Nouioui, Imen Ghodhbane-Gtari, Faten Armengaud, Jean Gtari, Maher Data Brief Immunology and Microbiology Frankia coriariae BMG5.1 cells were incubated with root exudates derived from compatible (Coriaria myrtifolia), incompatible (Alnus glutinosa) and non-actinorhizal (Cucumis melo) host plants. Bacteria cells and their exoproteomes were analyzed by high-throughput proteomics using a Q-Exactive HF high resolution tandem mass spectrometer incorporating an ultra-high-field orbitrap analyzer. MS/MS spectra were assigned with two protein sequence databases derived from the closely-related genomes from strains BMG5.1 andDg1, the Frankia symbiont of Datisca glomerata. The tandem mass spectrometry data accompanying the manuscript describing the database searches and comparative analysis (Ktari et al., 2017, doi.org/10.3389/fmicb.2017.00720) [1] have been deposited to the ProteomeXchange with identifiers PXD005979 (whole cell proteomes) and PXD005980 (exoproteome data). Elsevier 2017-07-11 /pmc/articles/PMC5526514/ /pubmed/28765834 http://dx.doi.org/10.1016/j.dib.2017.07.009 Text en © 2017 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Immunology and Microbiology
Miotello, Guylaine
Ktari, Amir
Gueddou, Abdellatif
Nouioui, Imen
Ghodhbane-Gtari, Faten
Armengaud, Jean
Gtari, Maher
Proteogenomics data for deciphering Frankia coriariae interactions with root exudates from three host plants()
title Proteogenomics data for deciphering Frankia coriariae interactions with root exudates from three host plants()
title_full Proteogenomics data for deciphering Frankia coriariae interactions with root exudates from three host plants()
title_fullStr Proteogenomics data for deciphering Frankia coriariae interactions with root exudates from three host plants()
title_full_unstemmed Proteogenomics data for deciphering Frankia coriariae interactions with root exudates from three host plants()
title_short Proteogenomics data for deciphering Frankia coriariae interactions with root exudates from three host plants()
title_sort proteogenomics data for deciphering frankia coriariae interactions with root exudates from three host plants()
topic Immunology and Microbiology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5526514/
https://www.ncbi.nlm.nih.gov/pubmed/28765834
http://dx.doi.org/10.1016/j.dib.2017.07.009
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