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ADME-Space: a new tool for medicinal chemists to explore ADME properties

We introduce a new chemical space for drugs and drug-like molecules, exclusively based on their in silico ADME behaviour. This ADME-Space is based on self-organizing map (SOM) applied to 26,000 molecules. Twenty accurate QSPR models, describing important ADME properties, were developed and, successi...

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Autores principales: Bocci, Giovanni, Carosati, Emanuele, Vayer, Philippe, Arrault, Alban, Lozano, Sylvain, Cruciani, Gabriele
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5527008/
https://www.ncbi.nlm.nih.gov/pubmed/28743970
http://dx.doi.org/10.1038/s41598-017-06692-0
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author Bocci, Giovanni
Carosati, Emanuele
Vayer, Philippe
Arrault, Alban
Lozano, Sylvain
Cruciani, Gabriele
author_facet Bocci, Giovanni
Carosati, Emanuele
Vayer, Philippe
Arrault, Alban
Lozano, Sylvain
Cruciani, Gabriele
author_sort Bocci, Giovanni
collection PubMed
description We introduce a new chemical space for drugs and drug-like molecules, exclusively based on their in silico ADME behaviour. This ADME-Space is based on self-organizing map (SOM) applied to 26,000 molecules. Twenty accurate QSPR models, describing important ADME properties, were developed and, successively, used as new molecular descriptors not related to molecular structure. Applications include permeability, active transport, metabolism and bioavailability studies, but the method can be even used to discuss drug-drug interactions (DDIs) or it can be extended to additional ADME properties. Thus, the ADME-Space opens a new framework for the multi-parametric data analysis in drug discovery where all ADME behaviours of molecules are condensed in one map: it allows medicinal chemists to simultaneously monitor several ADME properties, to rapidly select optimal ADME profiles, retrieve warning on potential ADME problems and DDIs or select proper in vitro experiments.
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spelling pubmed-55270082017-08-02 ADME-Space: a new tool for medicinal chemists to explore ADME properties Bocci, Giovanni Carosati, Emanuele Vayer, Philippe Arrault, Alban Lozano, Sylvain Cruciani, Gabriele Sci Rep Article We introduce a new chemical space for drugs and drug-like molecules, exclusively based on their in silico ADME behaviour. This ADME-Space is based on self-organizing map (SOM) applied to 26,000 molecules. Twenty accurate QSPR models, describing important ADME properties, were developed and, successively, used as new molecular descriptors not related to molecular structure. Applications include permeability, active transport, metabolism and bioavailability studies, but the method can be even used to discuss drug-drug interactions (DDIs) or it can be extended to additional ADME properties. Thus, the ADME-Space opens a new framework for the multi-parametric data analysis in drug discovery where all ADME behaviours of molecules are condensed in one map: it allows medicinal chemists to simultaneously monitor several ADME properties, to rapidly select optimal ADME profiles, retrieve warning on potential ADME problems and DDIs or select proper in vitro experiments. Nature Publishing Group UK 2017-07-25 /pmc/articles/PMC5527008/ /pubmed/28743970 http://dx.doi.org/10.1038/s41598-017-06692-0 Text en © The Author(s) 2017 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Bocci, Giovanni
Carosati, Emanuele
Vayer, Philippe
Arrault, Alban
Lozano, Sylvain
Cruciani, Gabriele
ADME-Space: a new tool for medicinal chemists to explore ADME properties
title ADME-Space: a new tool for medicinal chemists to explore ADME properties
title_full ADME-Space: a new tool for medicinal chemists to explore ADME properties
title_fullStr ADME-Space: a new tool for medicinal chemists to explore ADME properties
title_full_unstemmed ADME-Space: a new tool for medicinal chemists to explore ADME properties
title_short ADME-Space: a new tool for medicinal chemists to explore ADME properties
title_sort adme-space: a new tool for medicinal chemists to explore adme properties
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5527008/
https://www.ncbi.nlm.nih.gov/pubmed/28743970
http://dx.doi.org/10.1038/s41598-017-06692-0
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