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NRDTD: a database for clinically or experimentally supported non-coding RNAs and drug targets associations

In recent years, more and more non-coding RNAs (ncRNAs) have been identified and increasing evidences have shown that ncRNAs may affect gene expression and disease progression, making them a new class of targets for drug discovery. It thus becomes important to understand the relationship between ncR...

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Autores principales: Chen, Xing, Sun, Ya-Zhou, Zhang, De-Hong, Li, Jian-Qiang, Yan, Gui-Ying, An, Ji-Yong, You, Zhu-Hong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5527270/
https://www.ncbi.nlm.nih.gov/pubmed/29220444
http://dx.doi.org/10.1093/database/bax057
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author Chen, Xing
Sun, Ya-Zhou
Zhang, De-Hong
Li, Jian-Qiang
Yan, Gui-Ying
An, Ji-Yong
You, Zhu-Hong
author_facet Chen, Xing
Sun, Ya-Zhou
Zhang, De-Hong
Li, Jian-Qiang
Yan, Gui-Ying
An, Ji-Yong
You, Zhu-Hong
author_sort Chen, Xing
collection PubMed
description In recent years, more and more non-coding RNAs (ncRNAs) have been identified and increasing evidences have shown that ncRNAs may affect gene expression and disease progression, making them a new class of targets for drug discovery. It thus becomes important to understand the relationship between ncRNAs and drug targets. For this purpose, an ncRNAs and drug targets association database would be extremely beneficial. Here, we developed ncRNA Drug Targets Database (NRDTD) that collected 165 entries of clinically or experimentally supported ncRNAs as drug targets, including 97 ncRNAs and 96 drugs. Moreover, we annotated ncRNA-drug target associations with drug information from KEGG, PubChem, DrugBank, CTD or Wikipedia, GenBank sequence links, OMIM disease ID, pathway and function annotation for ncRNAs, detailed description of associations between ncRNAs and diseases from HMDD or LncRNADisease and the publication PubMed ID. Additionally, we provided users a link to submit novel disease-ncRNA-drug associations and corresponding supporting evidences into the database. We hope NRDTD will be a useful resource for investigating the roles of ncRNAs in drug target identification, drug discovery and disease treatment. Database URL: http://chengroup.cumt.edu.cn/NRDTD
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spelling pubmed-55272702017-07-27 NRDTD: a database for clinically or experimentally supported non-coding RNAs and drug targets associations Chen, Xing Sun, Ya-Zhou Zhang, De-Hong Li, Jian-Qiang Yan, Gui-Ying An, Ji-Yong You, Zhu-Hong Database (Oxford) Database Tool In recent years, more and more non-coding RNAs (ncRNAs) have been identified and increasing evidences have shown that ncRNAs may affect gene expression and disease progression, making them a new class of targets for drug discovery. It thus becomes important to understand the relationship between ncRNAs and drug targets. For this purpose, an ncRNAs and drug targets association database would be extremely beneficial. Here, we developed ncRNA Drug Targets Database (NRDTD) that collected 165 entries of clinically or experimentally supported ncRNAs as drug targets, including 97 ncRNAs and 96 drugs. Moreover, we annotated ncRNA-drug target associations with drug information from KEGG, PubChem, DrugBank, CTD or Wikipedia, GenBank sequence links, OMIM disease ID, pathway and function annotation for ncRNAs, detailed description of associations between ncRNAs and diseases from HMDD or LncRNADisease and the publication PubMed ID. Additionally, we provided users a link to submit novel disease-ncRNA-drug associations and corresponding supporting evidences into the database. We hope NRDTD will be a useful resource for investigating the roles of ncRNAs in drug target identification, drug discovery and disease treatment. Database URL: http://chengroup.cumt.edu.cn/NRDTD Oxford University Press 2017-07-21 /pmc/articles/PMC5527270/ /pubmed/29220444 http://dx.doi.org/10.1093/database/bax057 Text en © The Author(s) 2017. Published by Oxford University Press. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Database Tool
Chen, Xing
Sun, Ya-Zhou
Zhang, De-Hong
Li, Jian-Qiang
Yan, Gui-Ying
An, Ji-Yong
You, Zhu-Hong
NRDTD: a database for clinically or experimentally supported non-coding RNAs and drug targets associations
title NRDTD: a database for clinically or experimentally supported non-coding RNAs and drug targets associations
title_full NRDTD: a database for clinically or experimentally supported non-coding RNAs and drug targets associations
title_fullStr NRDTD: a database for clinically or experimentally supported non-coding RNAs and drug targets associations
title_full_unstemmed NRDTD: a database for clinically or experimentally supported non-coding RNAs and drug targets associations
title_short NRDTD: a database for clinically or experimentally supported non-coding RNAs and drug targets associations
title_sort nrdtd: a database for clinically or experimentally supported non-coding rnas and drug targets associations
topic Database Tool
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5527270/
https://www.ncbi.nlm.nih.gov/pubmed/29220444
http://dx.doi.org/10.1093/database/bax057
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