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Mitochondrial Genomes of Two Bombycoidea Insects and Implications for Their Phylogeny

The mitochondrial genome (mt genome) provides important information for understanding molecular evolution and phylogenetics. As such, the two complete mt genomes of Ampelophaga rubiginosa and Rondotia menciana were sequenced and annotated. The two circular genomes of A. rubiginosa and R. menciana ar...

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Autores principales: Xin, Zhao-Zhe, Yu Liu, Zhu, Xiao-Yu, Wang, Ying, Zhang, Hua-Bin, Zhang, Dai-Zhen, Zhou, Chun-Lin, Tang, Bo-Ping, Liu, Qiu-Ning
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5529375/
https://www.ncbi.nlm.nih.gov/pubmed/28747720
http://dx.doi.org/10.1038/s41598-017-06930-5
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author Xin, Zhao-Zhe
Yu Liu
Zhu, Xiao-Yu
Wang, Ying
Zhang, Hua-Bin
Zhang, Dai-Zhen
Zhou, Chun-Lin
Tang, Bo-Ping
Liu, Qiu-Ning
author_facet Xin, Zhao-Zhe
Yu Liu
Zhu, Xiao-Yu
Wang, Ying
Zhang, Hua-Bin
Zhang, Dai-Zhen
Zhou, Chun-Lin
Tang, Bo-Ping
Liu, Qiu-Ning
author_sort Xin, Zhao-Zhe
collection PubMed
description The mitochondrial genome (mt genome) provides important information for understanding molecular evolution and phylogenetics. As such, the two complete mt genomes of Ampelophaga rubiginosa and Rondotia menciana were sequenced and annotated. The two circular genomes of A. rubiginosa and R. menciana are 15,282 and 15,636 bp long, respectively, including 13 protein-coding genes (PCGs), two rRNA genes, 22 tRNA genes and an A + T-rich region. The nucleotide composition of the A. rubiginosa mt genome is A + T rich (81.5%) but is lower than that of R. menciana (82.2%). The AT skew is slightly positive and the GC skew is negative in these two mt genomes. Except for cox1, which started with CGA, all other 12PCGs started with ATN codons. The A + T-rich regions of A. rubiginosa and R. menciana were 399 bp and 604 bp long and consist of several features common to Bombycoidea insects. The order and orientation of A. rubiginosa and R. menciana mitogenomes with the order trnM-trnI-trnQ-nad2 is different from the ancestral insects in which trnM is located between trnQ and nad2 (trnI-trnQ-trnM-nad2). Phylogenetic analyses indicate that A. rubiginosa belongs in the Sphingidae family, and R. menciana belongs in the Bombycidae family.
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spelling pubmed-55293752017-08-02 Mitochondrial Genomes of Two Bombycoidea Insects and Implications for Their Phylogeny Xin, Zhao-Zhe Yu Liu Zhu, Xiao-Yu Wang, Ying Zhang, Hua-Bin Zhang, Dai-Zhen Zhou, Chun-Lin Tang, Bo-Ping Liu, Qiu-Ning Sci Rep Article The mitochondrial genome (mt genome) provides important information for understanding molecular evolution and phylogenetics. As such, the two complete mt genomes of Ampelophaga rubiginosa and Rondotia menciana were sequenced and annotated. The two circular genomes of A. rubiginosa and R. menciana are 15,282 and 15,636 bp long, respectively, including 13 protein-coding genes (PCGs), two rRNA genes, 22 tRNA genes and an A + T-rich region. The nucleotide composition of the A. rubiginosa mt genome is A + T rich (81.5%) but is lower than that of R. menciana (82.2%). The AT skew is slightly positive and the GC skew is negative in these two mt genomes. Except for cox1, which started with CGA, all other 12PCGs started with ATN codons. The A + T-rich regions of A. rubiginosa and R. menciana were 399 bp and 604 bp long and consist of several features common to Bombycoidea insects. The order and orientation of A. rubiginosa and R. menciana mitogenomes with the order trnM-trnI-trnQ-nad2 is different from the ancestral insects in which trnM is located between trnQ and nad2 (trnI-trnQ-trnM-nad2). Phylogenetic analyses indicate that A. rubiginosa belongs in the Sphingidae family, and R. menciana belongs in the Bombycidae family. Nature Publishing Group UK 2017-07-26 /pmc/articles/PMC5529375/ /pubmed/28747720 http://dx.doi.org/10.1038/s41598-017-06930-5 Text en © The Author(s) 2017 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Xin, Zhao-Zhe
Yu Liu
Zhu, Xiao-Yu
Wang, Ying
Zhang, Hua-Bin
Zhang, Dai-Zhen
Zhou, Chun-Lin
Tang, Bo-Ping
Liu, Qiu-Ning
Mitochondrial Genomes of Two Bombycoidea Insects and Implications for Their Phylogeny
title Mitochondrial Genomes of Two Bombycoidea Insects and Implications for Their Phylogeny
title_full Mitochondrial Genomes of Two Bombycoidea Insects and Implications for Their Phylogeny
title_fullStr Mitochondrial Genomes of Two Bombycoidea Insects and Implications for Their Phylogeny
title_full_unstemmed Mitochondrial Genomes of Two Bombycoidea Insects and Implications for Their Phylogeny
title_short Mitochondrial Genomes of Two Bombycoidea Insects and Implications for Their Phylogeny
title_sort mitochondrial genomes of two bombycoidea insects and implications for their phylogeny
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5529375/
https://www.ncbi.nlm.nih.gov/pubmed/28747720
http://dx.doi.org/10.1038/s41598-017-06930-5
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