Cargando…
The genome sequence of the wisent (Bison bonasus)
The wisent, also known as the European bison, was rescued from extinction approximately 80 years ago through the conservation of 12 individuals. Here, we present the draft genome sequence of a male wisent individual descended from this founding stock. A total of 366 billion base pairs (Gb) of raw re...
Autores principales: | , , , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2017
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5530314/ https://www.ncbi.nlm.nih.gov/pubmed/28327911 http://dx.doi.org/10.1093/gigascience/gix016 |
_version_ | 1783253244575744000 |
---|---|
author | Wang, Kun Wang, Lizhong Lenstra, Johannes A. Jian, Jianbo Yang, Yongzhi Hu, Quanjun Lai, Deyong Qiu, Qiang Ma, Tao Du, Zheng Abbott, Richard Liu, Jianquan |
author_facet | Wang, Kun Wang, Lizhong Lenstra, Johannes A. Jian, Jianbo Yang, Yongzhi Hu, Quanjun Lai, Deyong Qiu, Qiang Ma, Tao Du, Zheng Abbott, Richard Liu, Jianquan |
author_sort | Wang, Kun |
collection | PubMed |
description | The wisent, also known as the European bison, was rescued from extinction approximately 80 years ago through the conservation of 12 individuals. Here, we present the draft genome sequence of a male wisent individual descended from this founding stock. A total of 366 billion base pairs (Gb) of raw reads from whole-genome sequencing of this wisent were generated using the Illumina HiSeq2000 platform. The final genome assembly (2.58 Gb) is composed of 29,074 scaffolds with an N50 of 4.7 Mb. 47.3% of the genome is composed of repetitive elements. We identified 21,542 genes and 58,385 non-coding RNAs. A phylogenetic tree based on nuclear genomes indicated sister relationships between bison and wisent and between the wisent-bison clade and yak. For 75 genes we obtained evidence of positive evolution in the wisent lineage. We provide the first genome sequence and gene annotation for the wisent. The availability of these resources will be of value for the future conservation of this endangered large mammal and for reconstructing the evolutionary history of the Bovini tribe. |
format | Online Article Text |
id | pubmed-5530314 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-55303142017-07-31 The genome sequence of the wisent (Bison bonasus) Wang, Kun Wang, Lizhong Lenstra, Johannes A. Jian, Jianbo Yang, Yongzhi Hu, Quanjun Lai, Deyong Qiu, Qiang Ma, Tao Du, Zheng Abbott, Richard Liu, Jianquan Gigascience Data Note The wisent, also known as the European bison, was rescued from extinction approximately 80 years ago through the conservation of 12 individuals. Here, we present the draft genome sequence of a male wisent individual descended from this founding stock. A total of 366 billion base pairs (Gb) of raw reads from whole-genome sequencing of this wisent were generated using the Illumina HiSeq2000 platform. The final genome assembly (2.58 Gb) is composed of 29,074 scaffolds with an N50 of 4.7 Mb. 47.3% of the genome is composed of repetitive elements. We identified 21,542 genes and 58,385 non-coding RNAs. A phylogenetic tree based on nuclear genomes indicated sister relationships between bison and wisent and between the wisent-bison clade and yak. For 75 genes we obtained evidence of positive evolution in the wisent lineage. We provide the first genome sequence and gene annotation for the wisent. The availability of these resources will be of value for the future conservation of this endangered large mammal and for reconstructing the evolutionary history of the Bovini tribe. Oxford University Press 2017-03-10 /pmc/articles/PMC5530314/ /pubmed/28327911 http://dx.doi.org/10.1093/gigascience/gix016 Text en © The Author 2017. Published by Oxford University Press. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Data Note Wang, Kun Wang, Lizhong Lenstra, Johannes A. Jian, Jianbo Yang, Yongzhi Hu, Quanjun Lai, Deyong Qiu, Qiang Ma, Tao Du, Zheng Abbott, Richard Liu, Jianquan The genome sequence of the wisent (Bison bonasus) |
title | The genome sequence of the wisent (Bison bonasus) |
title_full | The genome sequence of the wisent (Bison bonasus) |
title_fullStr | The genome sequence of the wisent (Bison bonasus) |
title_full_unstemmed | The genome sequence of the wisent (Bison bonasus) |
title_short | The genome sequence of the wisent (Bison bonasus) |
title_sort | genome sequence of the wisent (bison bonasus) |
topic | Data Note |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5530314/ https://www.ncbi.nlm.nih.gov/pubmed/28327911 http://dx.doi.org/10.1093/gigascience/gix016 |
work_keys_str_mv | AT wangkun thegenomesequenceofthewisentbisonbonasus AT wanglizhong thegenomesequenceofthewisentbisonbonasus AT lenstrajohannesa thegenomesequenceofthewisentbisonbonasus AT jianjianbo thegenomesequenceofthewisentbisonbonasus AT yangyongzhi thegenomesequenceofthewisentbisonbonasus AT huquanjun thegenomesequenceofthewisentbisonbonasus AT laideyong thegenomesequenceofthewisentbisonbonasus AT qiuqiang thegenomesequenceofthewisentbisonbonasus AT matao thegenomesequenceofthewisentbisonbonasus AT duzheng thegenomesequenceofthewisentbisonbonasus AT abbottrichard thegenomesequenceofthewisentbisonbonasus AT liujianquan thegenomesequenceofthewisentbisonbonasus AT wangkun genomesequenceofthewisentbisonbonasus AT wanglizhong genomesequenceofthewisentbisonbonasus AT lenstrajohannesa genomesequenceofthewisentbisonbonasus AT jianjianbo genomesequenceofthewisentbisonbonasus AT yangyongzhi genomesequenceofthewisentbisonbonasus AT huquanjun genomesequenceofthewisentbisonbonasus AT laideyong genomesequenceofthewisentbisonbonasus AT qiuqiang genomesequenceofthewisentbisonbonasus AT matao genomesequenceofthewisentbisonbonasus AT duzheng genomesequenceofthewisentbisonbonasus AT abbottrichard genomesequenceofthewisentbisonbonasus AT liujianquan genomesequenceofthewisentbisonbonasus |