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Phenobook: an open source software for phenotypic data collection

BACKGROUND: Research projects often involve observation, registration, and data processing starting from information obtained in field experiments. In many cases, these tasks are carried out by several persons in different places, times, and ways, adding different levels of complexity and error in d...

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Detalles Bibliográficos
Autores principales: Crescente, Juan M., Guidobaldi, Fabio, Demichelis, Melina, Formica, Maria B., Helguera, Marcelo, Vanzetti, Leonardo S.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5530315/
https://www.ncbi.nlm.nih.gov/pubmed/28327910
http://dx.doi.org/10.1093/gigascience/giw019
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author Crescente, Juan M.
Guidobaldi, Fabio
Demichelis, Melina
Formica, Maria B.
Helguera, Marcelo
Vanzetti, Leonardo S.
author_facet Crescente, Juan M.
Guidobaldi, Fabio
Demichelis, Melina
Formica, Maria B.
Helguera, Marcelo
Vanzetti, Leonardo S.
author_sort Crescente, Juan M.
collection PubMed
description BACKGROUND: Research projects often involve observation, registration, and data processing starting from information obtained in field experiments. In many cases, these tasks are carried out by several persons in different places, times, and ways, adding different levels of complexity and error in data collecting. Furthermore, data processing can be time consuming, and input errors may produce unwanted results. RESULTS: We have developed a novel, open source software called Phenobook, an easy, flexible, and intuitive tool to organize, collect, and save experimental data for further analyses. Phenobook was conceived to collect phenotypic observations in a user-friendly, cost-effective way. It consists of a web-based software for experiment design, data input and visualization, and exportation, combined with a mobile application for remote data collecting. We provide in this article a detailed description of the developed tool. CONCLUSION: Phenobook is a software tool that can be easily implemented in collaborative research and development projects involving data collecting and forward analyses. Adopting Phenobook is expected to improve the involved processes by minimizing input errors, resulting in higher quality and reliability of the research outcomes.
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spelling pubmed-55303152017-07-31 Phenobook: an open source software for phenotypic data collection Crescente, Juan M. Guidobaldi, Fabio Demichelis, Melina Formica, Maria B. Helguera, Marcelo Vanzetti, Leonardo S. Gigascience Technical Note BACKGROUND: Research projects often involve observation, registration, and data processing starting from information obtained in field experiments. In many cases, these tasks are carried out by several persons in different places, times, and ways, adding different levels of complexity and error in data collecting. Furthermore, data processing can be time consuming, and input errors may produce unwanted results. RESULTS: We have developed a novel, open source software called Phenobook, an easy, flexible, and intuitive tool to organize, collect, and save experimental data for further analyses. Phenobook was conceived to collect phenotypic observations in a user-friendly, cost-effective way. It consists of a web-based software for experiment design, data input and visualization, and exportation, combined with a mobile application for remote data collecting. We provide in this article a detailed description of the developed tool. CONCLUSION: Phenobook is a software tool that can be easily implemented in collaborative research and development projects involving data collecting and forward analyses. Adopting Phenobook is expected to improve the involved processes by minimizing input errors, resulting in higher quality and reliability of the research outcomes. Oxford University Press 2017-02-24 /pmc/articles/PMC5530315/ /pubmed/28327910 http://dx.doi.org/10.1093/gigascience/giw019 Text en © The Author 2017. Published by Oxford University Press. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Technical Note
Crescente, Juan M.
Guidobaldi, Fabio
Demichelis, Melina
Formica, Maria B.
Helguera, Marcelo
Vanzetti, Leonardo S.
Phenobook: an open source software for phenotypic data collection
title Phenobook: an open source software for phenotypic data collection
title_full Phenobook: an open source software for phenotypic data collection
title_fullStr Phenobook: an open source software for phenotypic data collection
title_full_unstemmed Phenobook: an open source software for phenotypic data collection
title_short Phenobook: an open source software for phenotypic data collection
title_sort phenobook: an open source software for phenotypic data collection
topic Technical Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5530315/
https://www.ncbi.nlm.nih.gov/pubmed/28327910
http://dx.doi.org/10.1093/gigascience/giw019
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