The complete genome sequence of the cold adapted crude-oil degrader: Pedobacter steynii DX4

Pedobacter steynii DX4 was isolated from the soil of Tibetan Plateau and it can use crude oil as sole carbon and energy source at 15 °C. The genome of Pedobacter steynii DX4 has been sequenced and served as basis for analysis its metabolic mechanism. It is the first genome of crude oil degrading str...

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Autores principales: Chang, Sijing, Zhang, Gaosen, Chen, Ximing, Long, Haozhi, Wang, Yilin, Chen, Tuo, Liu, Guangxiu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2017
Materias:
Extended Genome Report
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5531107/
https://www.ncbi.nlm.nih.gov/pubmed/28770030
http://dx.doi.org/10.1186/s40793-017-0249-z
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author Chang, Sijing
Zhang, Gaosen
Chen, Ximing
Long, Haozhi
Wang, Yilin
Chen, Tuo
Liu, Guangxiu
author_facet Chang, Sijing
Zhang, Gaosen
Chen, Ximing
Long, Haozhi
Wang, Yilin
Chen, Tuo
Liu, Guangxiu
author_sort Chang, Sijing
collection PubMed
description Pedobacter steynii DX4 was isolated from the soil of Tibetan Plateau and it can use crude oil as sole carbon and energy source at 15 °C. The genome of Pedobacter steynii DX4 has been sequenced and served as basis for analysis its metabolic mechanism. It is the first genome of crude oil degrading strain in Pedobacter genus. The 6.58 Mb genome has an average G + C content of 41.31% and encodes 5464 genes. In addition, annotation revealed that Pedobacter steynii DX4 has cold shock proteins, abundant response regulators for cell motility, and enzymes involved in energy conversion and fatty acid metabolism. The genomic characteristics could provide information for further study of oil-degrading microbes for recovery of crude oil polluted environment.
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spelling pubmed-55311072017-08-02 The complete genome sequence of the cold adapted crude-oil degrader: Pedobacter steynii DX4 Chang, Sijing Zhang, Gaosen Chen, Ximing Long, Haozhi Wang, Yilin Chen, Tuo Liu, Guangxiu Stand Genomic Sci Extended Genome Report Pedobacter steynii DX4 was isolated from the soil of Tibetan Plateau and it can use crude oil as sole carbon and energy source at 15 °C. The genome of Pedobacter steynii DX4 has been sequenced and served as basis for analysis its metabolic mechanism. It is the first genome of crude oil degrading strain in Pedobacter genus. The 6.58 Mb genome has an average G + C content of 41.31% and encodes 5464 genes. In addition, annotation revealed that Pedobacter steynii DX4 has cold shock proteins, abundant response regulators for cell motility, and enzymes involved in energy conversion and fatty acid metabolism. The genomic characteristics could provide information for further study of oil-degrading microbes for recovery of crude oil polluted environment. BioMed Central 2017-07-27 /pmc/articles/PMC5531107/ /pubmed/28770030 http://dx.doi.org/10.1186/s40793-017-0249-z Text en © The Author(s). 2017 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Extended Genome Report
Chang, Sijing
Zhang, Gaosen
Chen, Ximing
Long, Haozhi
Wang, Yilin
Chen, Tuo
Liu, Guangxiu
The complete genome sequence of the cold adapted crude-oil degrader: Pedobacter steynii DX4
title The complete genome sequence of the cold adapted crude-oil degrader: Pedobacter steynii DX4
title_full The complete genome sequence of the cold adapted crude-oil degrader: Pedobacter steynii DX4
title_fullStr The complete genome sequence of the cold adapted crude-oil degrader: Pedobacter steynii DX4
title_full_unstemmed The complete genome sequence of the cold adapted crude-oil degrader: Pedobacter steynii DX4
title_short The complete genome sequence of the cold adapted crude-oil degrader: Pedobacter steynii DX4
title_sort complete genome sequence of the cold adapted crude-oil degrader: pedobacter steynii dx4
topic Extended Genome Report
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5531107/
https://www.ncbi.nlm.nih.gov/pubmed/28770030
http://dx.doi.org/10.1186/s40793-017-0249-z
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