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Characterization and expression analysis of the WRKY gene family in moso bamboo

The WRKY family of transcription factors (TFs) is one of the ten largest families of TFs in higher plants and has been implicated in multiple biological processes. Here, we identified 121 WRKY TFs in moso bamboo, including five novel members that were not annotated in the Phyllostachys edulis genomi...

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Autores principales: Li, Long, Mu, Shaohua, Cheng, Zhanchao, Cheng, Yuanwen, Zhang, Ying, Miao, Ying, Hou, Chenglin, Li, Xueping, Gao, Jian
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5532226/
https://www.ncbi.nlm.nih.gov/pubmed/28751687
http://dx.doi.org/10.1038/s41598-017-06701-2
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author Li, Long
Mu, Shaohua
Cheng, Zhanchao
Cheng, Yuanwen
Zhang, Ying
Miao, Ying
Hou, Chenglin
Li, Xueping
Gao, Jian
author_facet Li, Long
Mu, Shaohua
Cheng, Zhanchao
Cheng, Yuanwen
Zhang, Ying
Miao, Ying
Hou, Chenglin
Li, Xueping
Gao, Jian
author_sort Li, Long
collection PubMed
description The WRKY family of transcription factors (TFs) is one of the ten largest families of TFs in higher plants and has been implicated in multiple biological processes. Here, we identified 121 WRKY TFs in moso bamboo, including five novel members that were not annotated in the Phyllostachys edulis genomic database. Estimation of the divergence time of paralogous gene pairs revealed an important role of the recent whole-genome duplication in the expansion of the WRKY family. Expression analysis based on quantitative reverse-transcription polymerase chain reaction (qRT-PCR) data revealed that a large number of PheWRKY genes varied significantly under cold or drought stress treatments, which could be defined as abiotic stress-responsive genes. The overexpression of PheWRKY72-2 in Arabidopsis resulted in a decreased sensitivity to drought stress during early seedling growth. PheWRKY72-2 may enhance plant tolerance to stress by functioning as a positive regulator of stoma closure. Our study provides a theoretical foundation and some experimental evidence for further functional verification of the PheWRKY family of TFs.
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spelling pubmed-55322262017-08-02 Characterization and expression analysis of the WRKY gene family in moso bamboo Li, Long Mu, Shaohua Cheng, Zhanchao Cheng, Yuanwen Zhang, Ying Miao, Ying Hou, Chenglin Li, Xueping Gao, Jian Sci Rep Article The WRKY family of transcription factors (TFs) is one of the ten largest families of TFs in higher plants and has been implicated in multiple biological processes. Here, we identified 121 WRKY TFs in moso bamboo, including five novel members that were not annotated in the Phyllostachys edulis genomic database. Estimation of the divergence time of paralogous gene pairs revealed an important role of the recent whole-genome duplication in the expansion of the WRKY family. Expression analysis based on quantitative reverse-transcription polymerase chain reaction (qRT-PCR) data revealed that a large number of PheWRKY genes varied significantly under cold or drought stress treatments, which could be defined as abiotic stress-responsive genes. The overexpression of PheWRKY72-2 in Arabidopsis resulted in a decreased sensitivity to drought stress during early seedling growth. PheWRKY72-2 may enhance plant tolerance to stress by functioning as a positive regulator of stoma closure. Our study provides a theoretical foundation and some experimental evidence for further functional verification of the PheWRKY family of TFs. Nature Publishing Group UK 2017-07-27 /pmc/articles/PMC5532226/ /pubmed/28751687 http://dx.doi.org/10.1038/s41598-017-06701-2 Text en © The Author(s) 2017 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Li, Long
Mu, Shaohua
Cheng, Zhanchao
Cheng, Yuanwen
Zhang, Ying
Miao, Ying
Hou, Chenglin
Li, Xueping
Gao, Jian
Characterization and expression analysis of the WRKY gene family in moso bamboo
title Characterization and expression analysis of the WRKY gene family in moso bamboo
title_full Characterization and expression analysis of the WRKY gene family in moso bamboo
title_fullStr Characterization and expression analysis of the WRKY gene family in moso bamboo
title_full_unstemmed Characterization and expression analysis of the WRKY gene family in moso bamboo
title_short Characterization and expression analysis of the WRKY gene family in moso bamboo
title_sort characterization and expression analysis of the wrky gene family in moso bamboo
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5532226/
https://www.ncbi.nlm.nih.gov/pubmed/28751687
http://dx.doi.org/10.1038/s41598-017-06701-2
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