Rhizospheric Microbiome Profiling of Capsicum annuum L. Cultivated in Amended Soils by 16S and Internal Transcribed Spacer 2 rRNA Amplicon Metagenome Sequencing

Rhizospheric microbiomes of Capsicum annuum L. cultivated either conventionally or amended with a synthetic microbial consortium or a root exudate inductor, were characterized by 16S/internal transcribed spacer 2 (ITS2) rRNA amplicon metagenome sequencing. The most abundant taxa found, although diff...

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Autores principales: Asaff-Torres, Ali, Armendáriz-Ruiz, Mariana, Kirchmayr, Manuel, Rodríguez-Heredia, Raúl, Orozco, Marcos, Mateos-Díaz, Juan Carlos, Figueroa-Yáñez, Luis, Baqueiro-Peña, Itzamná, Verdín, Jorge
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Society for Microbiology 2017
Materias:
Prokaryotes
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5532826/
https://www.ncbi.nlm.nih.gov/pubmed/28751388
http://dx.doi.org/10.1128/genomeA.00626-17
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author Asaff-Torres, Ali
Armendáriz-Ruiz, Mariana
Kirchmayr, Manuel
Rodríguez-Heredia, Raúl
Orozco, Marcos
Mateos-Díaz, Juan Carlos
Figueroa-Yáñez, Luis
Baqueiro-Peña, Itzamná
Verdín, Jorge
author_facet Asaff-Torres, Ali
Armendáriz-Ruiz, Mariana
Kirchmayr, Manuel
Rodríguez-Heredia, Raúl
Orozco, Marcos
Mateos-Díaz, Juan Carlos
Figueroa-Yáñez, Luis
Baqueiro-Peña, Itzamná
Verdín, Jorge
author_sort Asaff-Torres, Ali
collection PubMed
description Rhizospheric microbiomes of Capsicum annuum L. cultivated either conventionally or amended with a synthetic microbial consortium or a root exudate inductor, were characterized by 16S/internal transcribed spacer 2 (ITS2) rRNA amplicon metagenome sequencing. The most abundant taxa found, although differently represented in each treatment, were Gammaproteobacteria, Alphaproteobacteria, Actinobacteria, and Bacilli, as well as Chytridiomycetes and Mortierellomycotina.
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spelling pubmed-55328262017-08-03 Rhizospheric Microbiome Profiling of Capsicum annuum L. Cultivated in Amended Soils by 16S and Internal Transcribed Spacer 2 rRNA Amplicon Metagenome Sequencing Asaff-Torres, Ali Armendáriz-Ruiz, Mariana Kirchmayr, Manuel Rodríguez-Heredia, Raúl Orozco, Marcos Mateos-Díaz, Juan Carlos Figueroa-Yáñez, Luis Baqueiro-Peña, Itzamná Verdín, Jorge Genome Announc Prokaryotes Rhizospheric microbiomes of Capsicum annuum L. cultivated either conventionally or amended with a synthetic microbial consortium or a root exudate inductor, were characterized by 16S/internal transcribed spacer 2 (ITS2) rRNA amplicon metagenome sequencing. The most abundant taxa found, although differently represented in each treatment, were Gammaproteobacteria, Alphaproteobacteria, Actinobacteria, and Bacilli, as well as Chytridiomycetes and Mortierellomycotina. American Society for Microbiology 2017-07-27 /pmc/articles/PMC5532826/ /pubmed/28751388 http://dx.doi.org/10.1128/genomeA.00626-17 Text en Copyright © 2017 Asaff-Torres et al. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license (http://creativecommons.org/licenses/by/4.0/) .
spellingShingle Prokaryotes
Asaff-Torres, Ali
Armendáriz-Ruiz, Mariana
Kirchmayr, Manuel
Rodríguez-Heredia, Raúl
Orozco, Marcos
Mateos-Díaz, Juan Carlos
Figueroa-Yáñez, Luis
Baqueiro-Peña, Itzamná
Verdín, Jorge
Rhizospheric Microbiome Profiling of Capsicum annuum L. Cultivated in Amended Soils by 16S and Internal Transcribed Spacer 2 rRNA Amplicon Metagenome Sequencing
title Rhizospheric Microbiome Profiling of Capsicum annuum L. Cultivated in Amended Soils by 16S and Internal Transcribed Spacer 2 rRNA Amplicon Metagenome Sequencing
title_full Rhizospheric Microbiome Profiling of Capsicum annuum L. Cultivated in Amended Soils by 16S and Internal Transcribed Spacer 2 rRNA Amplicon Metagenome Sequencing
title_fullStr Rhizospheric Microbiome Profiling of Capsicum annuum L. Cultivated in Amended Soils by 16S and Internal Transcribed Spacer 2 rRNA Amplicon Metagenome Sequencing
title_full_unstemmed Rhizospheric Microbiome Profiling of Capsicum annuum L. Cultivated in Amended Soils by 16S and Internal Transcribed Spacer 2 rRNA Amplicon Metagenome Sequencing
title_short Rhizospheric Microbiome Profiling of Capsicum annuum L. Cultivated in Amended Soils by 16S and Internal Transcribed Spacer 2 rRNA Amplicon Metagenome Sequencing
title_sort rhizospheric microbiome profiling of capsicum annuum l. cultivated in amended soils by 16s and internal transcribed spacer 2 rrna amplicon metagenome sequencing
topic Prokaryotes
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5532826/
https://www.ncbi.nlm.nih.gov/pubmed/28751388
http://dx.doi.org/10.1128/genomeA.00626-17
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