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A fast and accurate zebra finch syllable detector

The song of the adult male zebra finch is strikingly stereotyped. Efforts to understand motor output, pattern generation, and learning have taken advantage of this consistency by investigating the bird’s ability to modify specific parts of song under external cues, and by examining timing relationsh...

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Detalles Bibliográficos
Autores principales: Pearre, Ben, Perkins, L. Nathan, Markowitz, Jeffrey E., Gardner, Timothy J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5533338/
https://www.ncbi.nlm.nih.gov/pubmed/28753628
http://dx.doi.org/10.1371/journal.pone.0181992
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author Pearre, Ben
Perkins, L. Nathan
Markowitz, Jeffrey E.
Gardner, Timothy J.
author_facet Pearre, Ben
Perkins, L. Nathan
Markowitz, Jeffrey E.
Gardner, Timothy J.
author_sort Pearre, Ben
collection PubMed
description The song of the adult male zebra finch is strikingly stereotyped. Efforts to understand motor output, pattern generation, and learning have taken advantage of this consistency by investigating the bird’s ability to modify specific parts of song under external cues, and by examining timing relationships between neural activity and vocal output. Such experiments require that precise moments during song be identified in real time as the bird sings. Various syllable-detection methods exist, but many require special hardware, software, and know-how, and details on their implementation and performance are scarce. We present an accurate, versatile, and fast syllable detector that can control hardware at precisely timed moments during zebra finch song. Many moments during song can be isolated and detected with false negative and false positive rates well under 1% and 0.005% respectively. The detector can run on a stock Mac Mini with triggering delay of less than a millisecond and a jitter of σ ≈ 2 milliseconds.
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spelling pubmed-55333382017-08-07 A fast and accurate zebra finch syllable detector Pearre, Ben Perkins, L. Nathan Markowitz, Jeffrey E. Gardner, Timothy J. PLoS One Research Article The song of the adult male zebra finch is strikingly stereotyped. Efforts to understand motor output, pattern generation, and learning have taken advantage of this consistency by investigating the bird’s ability to modify specific parts of song under external cues, and by examining timing relationships between neural activity and vocal output. Such experiments require that precise moments during song be identified in real time as the bird sings. Various syllable-detection methods exist, but many require special hardware, software, and know-how, and details on their implementation and performance are scarce. We present an accurate, versatile, and fast syllable detector that can control hardware at precisely timed moments during zebra finch song. Many moments during song can be isolated and detected with false negative and false positive rates well under 1% and 0.005% respectively. The detector can run on a stock Mac Mini with triggering delay of less than a millisecond and a jitter of σ ≈ 2 milliseconds. Public Library of Science 2017-07-28 /pmc/articles/PMC5533338/ /pubmed/28753628 http://dx.doi.org/10.1371/journal.pone.0181992 Text en © 2017 Pearre et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Pearre, Ben
Perkins, L. Nathan
Markowitz, Jeffrey E.
Gardner, Timothy J.
A fast and accurate zebra finch syllable detector
title A fast and accurate zebra finch syllable detector
title_full A fast and accurate zebra finch syllable detector
title_fullStr A fast and accurate zebra finch syllable detector
title_full_unstemmed A fast and accurate zebra finch syllable detector
title_short A fast and accurate zebra finch syllable detector
title_sort fast and accurate zebra finch syllable detector
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5533338/
https://www.ncbi.nlm.nih.gov/pubmed/28753628
http://dx.doi.org/10.1371/journal.pone.0181992
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