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CLIMB (the Cloud Infrastructure for Microbial Bioinformatics): an online resource for the medical microbiology community
The increasing availability and decreasing cost of high-throughput sequencing has transformed academic medical microbiology, delivering an explosion in available genomes while also driving advances in bioinformatics. However, many microbiologists are unable to exploit the resulting large genomics da...
Autores principales: | , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Microbiology Society
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5537631/ https://www.ncbi.nlm.nih.gov/pubmed/28785418 http://dx.doi.org/10.1099/mgen.0.000086 |
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author | Connor, Thomas R. Loman, Nicholas J. Thompson, Simon Smith, Andy Southgate, Joel Poplawski, Radoslaw Bull, Matthew J. Richardson, Emily Ismail, Matthew Thompson, Simon Elwood- Kitchen, Christine Guest, Martyn Bakke, Marius Sheppard, Samuel K. Pallen, Mark J. |
author_facet | Connor, Thomas R. Loman, Nicholas J. Thompson, Simon Smith, Andy Southgate, Joel Poplawski, Radoslaw Bull, Matthew J. Richardson, Emily Ismail, Matthew Thompson, Simon Elwood- Kitchen, Christine Guest, Martyn Bakke, Marius Sheppard, Samuel K. Pallen, Mark J. |
author_sort | Connor, Thomas R. |
collection | PubMed |
description | The increasing availability and decreasing cost of high-throughput sequencing has transformed academic medical microbiology, delivering an explosion in available genomes while also driving advances in bioinformatics. However, many microbiologists are unable to exploit the resulting large genomics datasets because they do not have access to relevant computational resources and to an appropriate bioinformatics infrastructure. Here, we present the Cloud Infrastructure for Microbial Bioinformatics (CLIMB) facility, a shared computing infrastructure that has been designed from the ground up to provide an environment where microbiologists can share and reuse methods and data. |
format | Online Article Text |
id | pubmed-5537631 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Microbiology Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-55376312017-08-07 CLIMB (the Cloud Infrastructure for Microbial Bioinformatics): an online resource for the medical microbiology community Connor, Thomas R. Loman, Nicholas J. Thompson, Simon Smith, Andy Southgate, Joel Poplawski, Radoslaw Bull, Matthew J. Richardson, Emily Ismail, Matthew Thompson, Simon Elwood- Kitchen, Christine Guest, Martyn Bakke, Marius Sheppard, Samuel K. Pallen, Mark J. Microb Genom Short Paper The increasing availability and decreasing cost of high-throughput sequencing has transformed academic medical microbiology, delivering an explosion in available genomes while also driving advances in bioinformatics. However, many microbiologists are unable to exploit the resulting large genomics datasets because they do not have access to relevant computational resources and to an appropriate bioinformatics infrastructure. Here, we present the Cloud Infrastructure for Microbial Bioinformatics (CLIMB) facility, a shared computing infrastructure that has been designed from the ground up to provide an environment where microbiologists can share and reuse methods and data. Microbiology Society 2016-09-20 /pmc/articles/PMC5537631/ /pubmed/28785418 http://dx.doi.org/10.1099/mgen.0.000086 Text en © 2016 The Authors http://creativecommons.org/licenses/by/4.0/http://creativecommons.org/licenses/by/4.0/ This is an open access article under the terms of the Creative Commons Attribution 4.04.0 International License (http://creativecommons.org/licenses/by/4.0/http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Short Paper Connor, Thomas R. Loman, Nicholas J. Thompson, Simon Smith, Andy Southgate, Joel Poplawski, Radoslaw Bull, Matthew J. Richardson, Emily Ismail, Matthew Thompson, Simon Elwood- Kitchen, Christine Guest, Martyn Bakke, Marius Sheppard, Samuel K. Pallen, Mark J. CLIMB (the Cloud Infrastructure for Microbial Bioinformatics): an online resource for the medical microbiology community |
title | CLIMB (the Cloud Infrastructure for Microbial Bioinformatics): an online resource for the medical microbiology community |
title_full | CLIMB (the Cloud Infrastructure for Microbial Bioinformatics): an online resource for the medical microbiology community |
title_fullStr | CLIMB (the Cloud Infrastructure for Microbial Bioinformatics): an online resource for the medical microbiology community |
title_full_unstemmed | CLIMB (the Cloud Infrastructure for Microbial Bioinformatics): an online resource for the medical microbiology community |
title_short | CLIMB (the Cloud Infrastructure for Microbial Bioinformatics): an online resource for the medical microbiology community |
title_sort | climb (the cloud infrastructure for microbial bioinformatics): an online resource for the medical microbiology community |
topic | Short Paper |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5537631/ https://www.ncbi.nlm.nih.gov/pubmed/28785418 http://dx.doi.org/10.1099/mgen.0.000086 |
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