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CLIMB (the Cloud Infrastructure for Microbial Bioinformatics): an online resource for the medical microbiology community

The increasing availability and decreasing cost of high-throughput sequencing has transformed academic medical microbiology, delivering an explosion in available genomes while also driving advances in bioinformatics. However, many microbiologists are unable to exploit the resulting large genomics da...

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Autores principales: Connor, Thomas R., Loman, Nicholas J., Thompson, Simon, Smith, Andy, Southgate, Joel, Poplawski, Radoslaw, Bull, Matthew J., Richardson, Emily, Ismail, Matthew, Thompson, Simon Elwood-, Kitchen, Christine, Guest, Martyn, Bakke, Marius, Sheppard, Samuel K., Pallen, Mark J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Microbiology Society 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5537631/
https://www.ncbi.nlm.nih.gov/pubmed/28785418
http://dx.doi.org/10.1099/mgen.0.000086
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author Connor, Thomas R.
Loman, Nicholas J.
Thompson, Simon
Smith, Andy
Southgate, Joel
Poplawski, Radoslaw
Bull, Matthew J.
Richardson, Emily
Ismail, Matthew
Thompson, Simon Elwood-
Kitchen, Christine
Guest, Martyn
Bakke, Marius
Sheppard, Samuel K.
Pallen, Mark J.
author_facet Connor, Thomas R.
Loman, Nicholas J.
Thompson, Simon
Smith, Andy
Southgate, Joel
Poplawski, Radoslaw
Bull, Matthew J.
Richardson, Emily
Ismail, Matthew
Thompson, Simon Elwood-
Kitchen, Christine
Guest, Martyn
Bakke, Marius
Sheppard, Samuel K.
Pallen, Mark J.
author_sort Connor, Thomas R.
collection PubMed
description The increasing availability and decreasing cost of high-throughput sequencing has transformed academic medical microbiology, delivering an explosion in available genomes while also driving advances in bioinformatics. However, many microbiologists are unable to exploit the resulting large genomics datasets because they do not have access to relevant computational resources and to an appropriate bioinformatics infrastructure. Here, we present the Cloud Infrastructure for Microbial Bioinformatics (CLIMB) facility, a shared computing infrastructure that has been designed from the ground up to provide an environment where microbiologists can share and reuse methods and data.
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spelling pubmed-55376312017-08-07 CLIMB (the Cloud Infrastructure for Microbial Bioinformatics): an online resource for the medical microbiology community Connor, Thomas R. Loman, Nicholas J. Thompson, Simon Smith, Andy Southgate, Joel Poplawski, Radoslaw Bull, Matthew J. Richardson, Emily Ismail, Matthew Thompson, Simon Elwood- Kitchen, Christine Guest, Martyn Bakke, Marius Sheppard, Samuel K. Pallen, Mark J. Microb Genom Short Paper The increasing availability and decreasing cost of high-throughput sequencing has transformed academic medical microbiology, delivering an explosion in available genomes while also driving advances in bioinformatics. However, many microbiologists are unable to exploit the resulting large genomics datasets because they do not have access to relevant computational resources and to an appropriate bioinformatics infrastructure. Here, we present the Cloud Infrastructure for Microbial Bioinformatics (CLIMB) facility, a shared computing infrastructure that has been designed from the ground up to provide an environment where microbiologists can share and reuse methods and data. Microbiology Society 2016-09-20 /pmc/articles/PMC5537631/ /pubmed/28785418 http://dx.doi.org/10.1099/mgen.0.000086 Text en © 2016 The Authors http://creativecommons.org/licenses/by/4.0/http://creativecommons.org/licenses/by/4.0/ This is an open access article under the terms of the Creative Commons Attribution 4.04.0 International License (http://creativecommons.org/licenses/by/4.0/http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution and reproduction in any medium, provided the original author and source are credited.
spellingShingle Short Paper
Connor, Thomas R.
Loman, Nicholas J.
Thompson, Simon
Smith, Andy
Southgate, Joel
Poplawski, Radoslaw
Bull, Matthew J.
Richardson, Emily
Ismail, Matthew
Thompson, Simon Elwood-
Kitchen, Christine
Guest, Martyn
Bakke, Marius
Sheppard, Samuel K.
Pallen, Mark J.
CLIMB (the Cloud Infrastructure for Microbial Bioinformatics): an online resource for the medical microbiology community
title CLIMB (the Cloud Infrastructure for Microbial Bioinformatics): an online resource for the medical microbiology community
title_full CLIMB (the Cloud Infrastructure for Microbial Bioinformatics): an online resource for the medical microbiology community
title_fullStr CLIMB (the Cloud Infrastructure for Microbial Bioinformatics): an online resource for the medical microbiology community
title_full_unstemmed CLIMB (the Cloud Infrastructure for Microbial Bioinformatics): an online resource for the medical microbiology community
title_short CLIMB (the Cloud Infrastructure for Microbial Bioinformatics): an online resource for the medical microbiology community
title_sort climb (the cloud infrastructure for microbial bioinformatics): an online resource for the medical microbiology community
topic Short Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5537631/
https://www.ncbi.nlm.nih.gov/pubmed/28785418
http://dx.doi.org/10.1099/mgen.0.000086
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