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DNA barcoding of odonates from the Upper Plata basin: Database creation and genetic diversity estimation

We present a DNA barcoding study of Neotropical odonates from the Upper Plata basin, Brazil. A total of 38 species were collected in a transition region of “Cerrado” and Atlantic Forest, both regarded as biological hotspots, and 130 cytochrome c oxidase subunit I (COI) barcodes were generated for th...

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Autores principales: Koroiva, Ricardo, Pepinelli, Mateus, Rodrigues, Marciel Elio, Roque, Fabio de Oliveira, Lorenz-Lemke, Aline Pedroso, Kvist, Sebastian
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5538745/
https://www.ncbi.nlm.nih.gov/pubmed/28763495
http://dx.doi.org/10.1371/journal.pone.0182283
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author Koroiva, Ricardo
Pepinelli, Mateus
Rodrigues, Marciel Elio
Roque, Fabio de Oliveira
Lorenz-Lemke, Aline Pedroso
Kvist, Sebastian
author_facet Koroiva, Ricardo
Pepinelli, Mateus
Rodrigues, Marciel Elio
Roque, Fabio de Oliveira
Lorenz-Lemke, Aline Pedroso
Kvist, Sebastian
author_sort Koroiva, Ricardo
collection PubMed
description We present a DNA barcoding study of Neotropical odonates from the Upper Plata basin, Brazil. A total of 38 species were collected in a transition region of “Cerrado” and Atlantic Forest, both regarded as biological hotspots, and 130 cytochrome c oxidase subunit I (COI) barcodes were generated for the collected specimens. The distinct gap between intraspecific (0–2%) and interspecific variation (15% and above) in COI, and resulting separation of Barcode Index Numbers (BIN), allowed for successful identification of specimens in 94% of cases. The 6% fail rate was due to a shared BIN between two separate nominal species. DNA barcoding, based on COI, thus seems to be a reliable and efficient tool for identifying Neotropical odonate specimens down to the species level. These results underscore the utility of DNA barcoding to aid specimen identification in diverse biological hotspots, areas that require urgent action regarding taxonomic surveys and biodiversity conservation.
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spelling pubmed-55387452017-08-07 DNA barcoding of odonates from the Upper Plata basin: Database creation and genetic diversity estimation Koroiva, Ricardo Pepinelli, Mateus Rodrigues, Marciel Elio Roque, Fabio de Oliveira Lorenz-Lemke, Aline Pedroso Kvist, Sebastian PLoS One Research Article We present a DNA barcoding study of Neotropical odonates from the Upper Plata basin, Brazil. A total of 38 species were collected in a transition region of “Cerrado” and Atlantic Forest, both regarded as biological hotspots, and 130 cytochrome c oxidase subunit I (COI) barcodes were generated for the collected specimens. The distinct gap between intraspecific (0–2%) and interspecific variation (15% and above) in COI, and resulting separation of Barcode Index Numbers (BIN), allowed for successful identification of specimens in 94% of cases. The 6% fail rate was due to a shared BIN between two separate nominal species. DNA barcoding, based on COI, thus seems to be a reliable and efficient tool for identifying Neotropical odonate specimens down to the species level. These results underscore the utility of DNA barcoding to aid specimen identification in diverse biological hotspots, areas that require urgent action regarding taxonomic surveys and biodiversity conservation. Public Library of Science 2017-08-01 /pmc/articles/PMC5538745/ /pubmed/28763495 http://dx.doi.org/10.1371/journal.pone.0182283 Text en © 2017 Koroiva et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Koroiva, Ricardo
Pepinelli, Mateus
Rodrigues, Marciel Elio
Roque, Fabio de Oliveira
Lorenz-Lemke, Aline Pedroso
Kvist, Sebastian
DNA barcoding of odonates from the Upper Plata basin: Database creation and genetic diversity estimation
title DNA barcoding of odonates from the Upper Plata basin: Database creation and genetic diversity estimation
title_full DNA barcoding of odonates from the Upper Plata basin: Database creation and genetic diversity estimation
title_fullStr DNA barcoding of odonates from the Upper Plata basin: Database creation and genetic diversity estimation
title_full_unstemmed DNA barcoding of odonates from the Upper Plata basin: Database creation and genetic diversity estimation
title_short DNA barcoding of odonates from the Upper Plata basin: Database creation and genetic diversity estimation
title_sort dna barcoding of odonates from the upper plata basin: database creation and genetic diversity estimation
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5538745/
https://www.ncbi.nlm.nih.gov/pubmed/28763495
http://dx.doi.org/10.1371/journal.pone.0182283
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