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Cellular Level In-silico Modeling of Blood Rheology with An Improved Material Model for Red Blood Cells

Many of the intriguing properties of blood originate from its cellular nature. Therefore, accurate modeling of blood flow related phenomena requires a description of the dynamics at the level of individual cells. This, however, presents several computational challenges that can only be addressed by...

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Autores principales: Závodszky, Gábor, van Rooij, Britt, Azizi, Victor, Hoekstra, Alfons
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5539232/
https://www.ncbi.nlm.nih.gov/pubmed/28824458
http://dx.doi.org/10.3389/fphys.2017.00563
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author Závodszky, Gábor
van Rooij, Britt
Azizi, Victor
Hoekstra, Alfons
author_facet Závodszky, Gábor
van Rooij, Britt
Azizi, Victor
Hoekstra, Alfons
author_sort Závodszky, Gábor
collection PubMed
description Many of the intriguing properties of blood originate from its cellular nature. Therefore, accurate modeling of blood flow related phenomena requires a description of the dynamics at the level of individual cells. This, however, presents several computational challenges that can only be addressed by high performance computing. We present Hemocell, a parallel computing framework which implements validated mechanical models for red blood cells and is capable of reproducing the emergent transport characteristics of such a complex cellular system. It is computationally capable of handling large domain sizes, thus it is able to bridge the cell-based micro-scale and macroscopic domains. We introduce a new material model for resolving the mechanical responses of red blood cell membranes under various flow conditions and compare it with a well established model. Our new constitutive model has similar accuracy under relaxed flow conditions, however, it performs better for shear rates over 1,500 s(−1). We also introduce a new method to generate randomized initial conditions for dense mixtures of different cell types free of initial positioning artifacts.
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spelling pubmed-55392322017-08-18 Cellular Level In-silico Modeling of Blood Rheology with An Improved Material Model for Red Blood Cells Závodszky, Gábor van Rooij, Britt Azizi, Victor Hoekstra, Alfons Front Physiol Physiology Many of the intriguing properties of blood originate from its cellular nature. Therefore, accurate modeling of blood flow related phenomena requires a description of the dynamics at the level of individual cells. This, however, presents several computational challenges that can only be addressed by high performance computing. We present Hemocell, a parallel computing framework which implements validated mechanical models for red blood cells and is capable of reproducing the emergent transport characteristics of such a complex cellular system. It is computationally capable of handling large domain sizes, thus it is able to bridge the cell-based micro-scale and macroscopic domains. We introduce a new material model for resolving the mechanical responses of red blood cell membranes under various flow conditions and compare it with a well established model. Our new constitutive model has similar accuracy under relaxed flow conditions, however, it performs better for shear rates over 1,500 s(−1). We also introduce a new method to generate randomized initial conditions for dense mixtures of different cell types free of initial positioning artifacts. Frontiers Media S.A. 2017-08-02 /pmc/articles/PMC5539232/ /pubmed/28824458 http://dx.doi.org/10.3389/fphys.2017.00563 Text en Copyright © 2017 Závodszky, van Rooij, Azizi and Hoekstra. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Physiology
Závodszky, Gábor
van Rooij, Britt
Azizi, Victor
Hoekstra, Alfons
Cellular Level In-silico Modeling of Blood Rheology with An Improved Material Model for Red Blood Cells
title Cellular Level In-silico Modeling of Blood Rheology with An Improved Material Model for Red Blood Cells
title_full Cellular Level In-silico Modeling of Blood Rheology with An Improved Material Model for Red Blood Cells
title_fullStr Cellular Level In-silico Modeling of Blood Rheology with An Improved Material Model for Red Blood Cells
title_full_unstemmed Cellular Level In-silico Modeling of Blood Rheology with An Improved Material Model for Red Blood Cells
title_short Cellular Level In-silico Modeling of Blood Rheology with An Improved Material Model for Red Blood Cells
title_sort cellular level in-silico modeling of blood rheology with an improved material model for red blood cells
topic Physiology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5539232/
https://www.ncbi.nlm.nih.gov/pubmed/28824458
http://dx.doi.org/10.3389/fphys.2017.00563
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