Cargando…

Network Inference and Maximum Entropy Estimation on Information Diagrams

Maximum entropy estimation is of broad interest for inferring properties of systems across many disciplines. Using a recently introduced technique for estimating the maximum entropy of a set of random discrete variables when conditioning on bivariate mutual informations and univariate entropies, we...

Descripción completa

Detalles Bibliográficos
Autores principales: Martin, Elliot A., Hlinka, Jaroslav, Meinke, Alexander, Děchtěrenko, Filip, Tintěra, Jaroslav, Oliver, Isaura, Davidsen, Jörn
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5539257/
https://www.ncbi.nlm.nih.gov/pubmed/28765522
http://dx.doi.org/10.1038/s41598-017-06208-w
_version_ 1783254453724381184
author Martin, Elliot A.
Hlinka, Jaroslav
Meinke, Alexander
Děchtěrenko, Filip
Tintěra, Jaroslav
Oliver, Isaura
Davidsen, Jörn
author_facet Martin, Elliot A.
Hlinka, Jaroslav
Meinke, Alexander
Děchtěrenko, Filip
Tintěra, Jaroslav
Oliver, Isaura
Davidsen, Jörn
author_sort Martin, Elliot A.
collection PubMed
description Maximum entropy estimation is of broad interest for inferring properties of systems across many disciplines. Using a recently introduced technique for estimating the maximum entropy of a set of random discrete variables when conditioning on bivariate mutual informations and univariate entropies, we show how this can be used to estimate the direct network connectivity between interacting units from observed activity. As a generic example, we consider phase oscillators and show that our approach is typically superior to simply using the mutual information. In addition, we propose a nonparametric formulation of connected informations, used to test the explanatory power of a network description in general. We give an illustrative example showing how this agrees with the existing parametric formulation, and demonstrate its applicability and advantages for resting-state human brain networks, for which we also discuss its direct effective connectivity. Finally, we generalize to continuous random variables and vastly expand the types of information-theoretic quantities one can condition on. This allows us to establish significant advantages of this approach over existing ones. Not only does our method perform favorably in the undersampled regime, where existing methods fail, but it also can be dramatically less computationally expensive as the cardinality of the variables increases.
format Online
Article
Text
id pubmed-5539257
institution National Center for Biotechnology Information
language English
publishDate 2017
publisher Nature Publishing Group UK
record_format MEDLINE/PubMed
spelling pubmed-55392572017-08-07 Network Inference and Maximum Entropy Estimation on Information Diagrams Martin, Elliot A. Hlinka, Jaroslav Meinke, Alexander Děchtěrenko, Filip Tintěra, Jaroslav Oliver, Isaura Davidsen, Jörn Sci Rep Article Maximum entropy estimation is of broad interest for inferring properties of systems across many disciplines. Using a recently introduced technique for estimating the maximum entropy of a set of random discrete variables when conditioning on bivariate mutual informations and univariate entropies, we show how this can be used to estimate the direct network connectivity between interacting units from observed activity. As a generic example, we consider phase oscillators and show that our approach is typically superior to simply using the mutual information. In addition, we propose a nonparametric formulation of connected informations, used to test the explanatory power of a network description in general. We give an illustrative example showing how this agrees with the existing parametric formulation, and demonstrate its applicability and advantages for resting-state human brain networks, for which we also discuss its direct effective connectivity. Finally, we generalize to continuous random variables and vastly expand the types of information-theoretic quantities one can condition on. This allows us to establish significant advantages of this approach over existing ones. Not only does our method perform favorably in the undersampled regime, where existing methods fail, but it also can be dramatically less computationally expensive as the cardinality of the variables increases. Nature Publishing Group UK 2017-08-01 /pmc/articles/PMC5539257/ /pubmed/28765522 http://dx.doi.org/10.1038/s41598-017-06208-w Text en © The Author(s) 2017 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Martin, Elliot A.
Hlinka, Jaroslav
Meinke, Alexander
Děchtěrenko, Filip
Tintěra, Jaroslav
Oliver, Isaura
Davidsen, Jörn
Network Inference and Maximum Entropy Estimation on Information Diagrams
title Network Inference and Maximum Entropy Estimation on Information Diagrams
title_full Network Inference and Maximum Entropy Estimation on Information Diagrams
title_fullStr Network Inference and Maximum Entropy Estimation on Information Diagrams
title_full_unstemmed Network Inference and Maximum Entropy Estimation on Information Diagrams
title_short Network Inference and Maximum Entropy Estimation on Information Diagrams
title_sort network inference and maximum entropy estimation on information diagrams
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5539257/
https://www.ncbi.nlm.nih.gov/pubmed/28765522
http://dx.doi.org/10.1038/s41598-017-06208-w
work_keys_str_mv AT martinelliota networkinferenceandmaximumentropyestimationoninformationdiagrams
AT hlinkajaroslav networkinferenceandmaximumentropyestimationoninformationdiagrams
AT meinkealexander networkinferenceandmaximumentropyestimationoninformationdiagrams
AT dechterenkofilip networkinferenceandmaximumentropyestimationoninformationdiagrams
AT tinterajaroslav networkinferenceandmaximumentropyestimationoninformationdiagrams
AT oliverisaura networkinferenceandmaximumentropyestimationoninformationdiagrams
AT davidsenjorn networkinferenceandmaximumentropyestimationoninformationdiagrams