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Network Inference and Maximum Entropy Estimation on Information Diagrams
Maximum entropy estimation is of broad interest for inferring properties of systems across many disciplines. Using a recently introduced technique for estimating the maximum entropy of a set of random discrete variables when conditioning on bivariate mutual informations and univariate entropies, we...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5539257/ https://www.ncbi.nlm.nih.gov/pubmed/28765522 http://dx.doi.org/10.1038/s41598-017-06208-w |
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author | Martin, Elliot A. Hlinka, Jaroslav Meinke, Alexander Děchtěrenko, Filip Tintěra, Jaroslav Oliver, Isaura Davidsen, Jörn |
author_facet | Martin, Elliot A. Hlinka, Jaroslav Meinke, Alexander Děchtěrenko, Filip Tintěra, Jaroslav Oliver, Isaura Davidsen, Jörn |
author_sort | Martin, Elliot A. |
collection | PubMed |
description | Maximum entropy estimation is of broad interest for inferring properties of systems across many disciplines. Using a recently introduced technique for estimating the maximum entropy of a set of random discrete variables when conditioning on bivariate mutual informations and univariate entropies, we show how this can be used to estimate the direct network connectivity between interacting units from observed activity. As a generic example, we consider phase oscillators and show that our approach is typically superior to simply using the mutual information. In addition, we propose a nonparametric formulation of connected informations, used to test the explanatory power of a network description in general. We give an illustrative example showing how this agrees with the existing parametric formulation, and demonstrate its applicability and advantages for resting-state human brain networks, for which we also discuss its direct effective connectivity. Finally, we generalize to continuous random variables and vastly expand the types of information-theoretic quantities one can condition on. This allows us to establish significant advantages of this approach over existing ones. Not only does our method perform favorably in the undersampled regime, where existing methods fail, but it also can be dramatically less computationally expensive as the cardinality of the variables increases. |
format | Online Article Text |
id | pubmed-5539257 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-55392572017-08-07 Network Inference and Maximum Entropy Estimation on Information Diagrams Martin, Elliot A. Hlinka, Jaroslav Meinke, Alexander Děchtěrenko, Filip Tintěra, Jaroslav Oliver, Isaura Davidsen, Jörn Sci Rep Article Maximum entropy estimation is of broad interest for inferring properties of systems across many disciplines. Using a recently introduced technique for estimating the maximum entropy of a set of random discrete variables when conditioning on bivariate mutual informations and univariate entropies, we show how this can be used to estimate the direct network connectivity between interacting units from observed activity. As a generic example, we consider phase oscillators and show that our approach is typically superior to simply using the mutual information. In addition, we propose a nonparametric formulation of connected informations, used to test the explanatory power of a network description in general. We give an illustrative example showing how this agrees with the existing parametric formulation, and demonstrate its applicability and advantages for resting-state human brain networks, for which we also discuss its direct effective connectivity. Finally, we generalize to continuous random variables and vastly expand the types of information-theoretic quantities one can condition on. This allows us to establish significant advantages of this approach over existing ones. Not only does our method perform favorably in the undersampled regime, where existing methods fail, but it also can be dramatically less computationally expensive as the cardinality of the variables increases. Nature Publishing Group UK 2017-08-01 /pmc/articles/PMC5539257/ /pubmed/28765522 http://dx.doi.org/10.1038/s41598-017-06208-w Text en © The Author(s) 2017 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Martin, Elliot A. Hlinka, Jaroslav Meinke, Alexander Děchtěrenko, Filip Tintěra, Jaroslav Oliver, Isaura Davidsen, Jörn Network Inference and Maximum Entropy Estimation on Information Diagrams |
title | Network Inference and Maximum Entropy Estimation on Information Diagrams |
title_full | Network Inference and Maximum Entropy Estimation on Information Diagrams |
title_fullStr | Network Inference and Maximum Entropy Estimation on Information Diagrams |
title_full_unstemmed | Network Inference and Maximum Entropy Estimation on Information Diagrams |
title_short | Network Inference and Maximum Entropy Estimation on Information Diagrams |
title_sort | network inference and maximum entropy estimation on information diagrams |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5539257/ https://www.ncbi.nlm.nih.gov/pubmed/28765522 http://dx.doi.org/10.1038/s41598-017-06208-w |
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