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High-Coverage Whole-Exome Sequencing Identifies Candidate Genes for Suicide in Victims with Major Depressive Disorder

We carried out whole-exome ultra-high throughput sequencing in brain samples of suicide victims who had suffered from major depressive disorder and control subjects who had died from other causes. This study aimed to reveal the selective accumulation of rare variants in the coding and the UTR sequen...

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Autores principales: Tombácz, Dóra, Maróti, Zoltán, Kalmár, Tibor, Csabai, Zsolt, Balázs, Zsolt, Takahashi, Shinichi, Palkovits, Miklós, Snyder, Michael, Boldogkői, Zsolt
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5541090/
https://www.ncbi.nlm.nih.gov/pubmed/28769055
http://dx.doi.org/10.1038/s41598-017-06522-3
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author Tombácz, Dóra
Maróti, Zoltán
Kalmár, Tibor
Csabai, Zsolt
Balázs, Zsolt
Takahashi, Shinichi
Palkovits, Miklós
Snyder, Michael
Boldogkői, Zsolt
author_facet Tombácz, Dóra
Maróti, Zoltán
Kalmár, Tibor
Csabai, Zsolt
Balázs, Zsolt
Takahashi, Shinichi
Palkovits, Miklós
Snyder, Michael
Boldogkői, Zsolt
author_sort Tombácz, Dóra
collection PubMed
description We carried out whole-exome ultra-high throughput sequencing in brain samples of suicide victims who had suffered from major depressive disorder and control subjects who had died from other causes. This study aimed to reveal the selective accumulation of rare variants in the coding and the UTR sequences within the genes of suicide victims. We also analysed the potential effect of STR and CNV variations, as well as the infection of the brain with neurovirulent viruses in this behavioural disorder. As a result, we have identified several candidate genes, among others three calcium channel genes that may potentially contribute to completed suicide. We also explored the potential implication of the TGF-β signalling pathway in the pathogenesis of suicidal behaviour. To our best knowledge, this is the first study that uses whole-exome sequencing for the investigation of suicide.
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spelling pubmed-55410902017-08-07 High-Coverage Whole-Exome Sequencing Identifies Candidate Genes for Suicide in Victims with Major Depressive Disorder Tombácz, Dóra Maróti, Zoltán Kalmár, Tibor Csabai, Zsolt Balázs, Zsolt Takahashi, Shinichi Palkovits, Miklós Snyder, Michael Boldogkői, Zsolt Sci Rep Article We carried out whole-exome ultra-high throughput sequencing in brain samples of suicide victims who had suffered from major depressive disorder and control subjects who had died from other causes. This study aimed to reveal the selective accumulation of rare variants in the coding and the UTR sequences within the genes of suicide victims. We also analysed the potential effect of STR and CNV variations, as well as the infection of the brain with neurovirulent viruses in this behavioural disorder. As a result, we have identified several candidate genes, among others three calcium channel genes that may potentially contribute to completed suicide. We also explored the potential implication of the TGF-β signalling pathway in the pathogenesis of suicidal behaviour. To our best knowledge, this is the first study that uses whole-exome sequencing for the investigation of suicide. Nature Publishing Group UK 2017-08-02 /pmc/articles/PMC5541090/ /pubmed/28769055 http://dx.doi.org/10.1038/s41598-017-06522-3 Text en © The Author(s) 2017 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Tombácz, Dóra
Maróti, Zoltán
Kalmár, Tibor
Csabai, Zsolt
Balázs, Zsolt
Takahashi, Shinichi
Palkovits, Miklós
Snyder, Michael
Boldogkői, Zsolt
High-Coverage Whole-Exome Sequencing Identifies Candidate Genes for Suicide in Victims with Major Depressive Disorder
title High-Coverage Whole-Exome Sequencing Identifies Candidate Genes for Suicide in Victims with Major Depressive Disorder
title_full High-Coverage Whole-Exome Sequencing Identifies Candidate Genes for Suicide in Victims with Major Depressive Disorder
title_fullStr High-Coverage Whole-Exome Sequencing Identifies Candidate Genes for Suicide in Victims with Major Depressive Disorder
title_full_unstemmed High-Coverage Whole-Exome Sequencing Identifies Candidate Genes for Suicide in Victims with Major Depressive Disorder
title_short High-Coverage Whole-Exome Sequencing Identifies Candidate Genes for Suicide in Victims with Major Depressive Disorder
title_sort high-coverage whole-exome sequencing identifies candidate genes for suicide in victims with major depressive disorder
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5541090/
https://www.ncbi.nlm.nih.gov/pubmed/28769055
http://dx.doi.org/10.1038/s41598-017-06522-3
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