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Deformable appearance pyramids for anatomy representation, landmark detection and pathology classification

PURPOSE: Representation of anatomy appearance is one of the key problems in medical image analysis. An appearance model represents the anatomies with parametric forms, which are then vectorised for prior learning, segmentation and classification tasks. METHODS: We propose a part-based parametric app...

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Autores principales: Zhang, Qiang, Bhalerao, Abhir, Hutchinson, Charles
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer International Publishing 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5541155/
https://www.ncbi.nlm.nih.gov/pubmed/28580526
http://dx.doi.org/10.1007/s11548-017-1622-5
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author Zhang, Qiang
Bhalerao, Abhir
Hutchinson, Charles
author_facet Zhang, Qiang
Bhalerao, Abhir
Hutchinson, Charles
author_sort Zhang, Qiang
collection PubMed
description PURPOSE: Representation of anatomy appearance is one of the key problems in medical image analysis. An appearance model represents the anatomies with parametric forms, which are then vectorised for prior learning, segmentation and classification tasks. METHODS: We propose a part-based parametric appearance model we refer to as a deformable appearance pyramid (DAP). The parts are delineated by multi-scale local feature pyramids extracted from an image pyramid. Each anatomy is represented by an appearance pyramid, with the variability within a population approximated by local translations of the multi-scale parts and linear appearance variations in the assembly of the parts. We introduce DAPs built on two types of image pyramids, namely Gaussian and wavelet pyramids, and present two approaches to model the prior and fit the model, one explicitly using a subspace Lucas–Kanade algorithm and the other implicitly using the supervised descent method (SDM). RESULTS: We validate the performance of the DAP instances with difference configurations on the problem of lumbar spinal stenosis for localising the landmarks and classifying the pathologies. We also compare them with classic methods such as active shape models, active appearance models and constrained local models. Experimental results show that the DAP built on wavelet pyramids and fitted with SDM gives the best results in both landmark localisation and classification. CONCLUSION: A new appearance model is introduced with several configurations presented and evaluated. The DAPs can be readily applied for other clinical problems for the tasks of prior learning, landmark detection and pathology classification.
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spelling pubmed-55411552017-08-17 Deformable appearance pyramids for anatomy representation, landmark detection and pathology classification Zhang, Qiang Bhalerao, Abhir Hutchinson, Charles Int J Comput Assist Radiol Surg Original Article PURPOSE: Representation of anatomy appearance is one of the key problems in medical image analysis. An appearance model represents the anatomies with parametric forms, which are then vectorised for prior learning, segmentation and classification tasks. METHODS: We propose a part-based parametric appearance model we refer to as a deformable appearance pyramid (DAP). The parts are delineated by multi-scale local feature pyramids extracted from an image pyramid. Each anatomy is represented by an appearance pyramid, with the variability within a population approximated by local translations of the multi-scale parts and linear appearance variations in the assembly of the parts. We introduce DAPs built on two types of image pyramids, namely Gaussian and wavelet pyramids, and present two approaches to model the prior and fit the model, one explicitly using a subspace Lucas–Kanade algorithm and the other implicitly using the supervised descent method (SDM). RESULTS: We validate the performance of the DAP instances with difference configurations on the problem of lumbar spinal stenosis for localising the landmarks and classifying the pathologies. We also compare them with classic methods such as active shape models, active appearance models and constrained local models. Experimental results show that the DAP built on wavelet pyramids and fitted with SDM gives the best results in both landmark localisation and classification. CONCLUSION: A new appearance model is introduced with several configurations presented and evaluated. The DAPs can be readily applied for other clinical problems for the tasks of prior learning, landmark detection and pathology classification. Springer International Publishing 2017-06-03 2017 /pmc/articles/PMC5541155/ /pubmed/28580526 http://dx.doi.org/10.1007/s11548-017-1622-5 Text en © The Author(s) 2017 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made.
spellingShingle Original Article
Zhang, Qiang
Bhalerao, Abhir
Hutchinson, Charles
Deformable appearance pyramids for anatomy representation, landmark detection and pathology classification
title Deformable appearance pyramids for anatomy representation, landmark detection and pathology classification
title_full Deformable appearance pyramids for anatomy representation, landmark detection and pathology classification
title_fullStr Deformable appearance pyramids for anatomy representation, landmark detection and pathology classification
title_full_unstemmed Deformable appearance pyramids for anatomy representation, landmark detection and pathology classification
title_short Deformable appearance pyramids for anatomy representation, landmark detection and pathology classification
title_sort deformable appearance pyramids for anatomy representation, landmark detection and pathology classification
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5541155/
https://www.ncbi.nlm.nih.gov/pubmed/28580526
http://dx.doi.org/10.1007/s11548-017-1622-5
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