SAXS4COLL: an integrated software tool for analysing fibrous collagen-based tissues

This article provides an overview of a new integrated software tool for reduction and analysis of small-angle X-ray scattering (SAXS) data from fibrous collagen tissues, with some wider applicability to other cylindrically symmetric scattering systems. SAXS4COLL combines interactive features for dat...

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Detalles Bibliográficos
Autores principales: Abass, Ahmed, Bell, James S., Spang, Martin T., Hayes, Sally, Meek, Keith M., Boote, Craig
Formato: Online Artículo Texto
Lenguaje:English
Publicado: International Union of Crystallography 2017
Materias:
Computer Programs
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5541358/
https://www.ncbi.nlm.nih.gov/pubmed/28808439
http://dx.doi.org/10.1107/S1600576717007877
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author Abass, Ahmed
Bell, James S.
Spang, Martin T.
Hayes, Sally
Meek, Keith M.
Boote, Craig
author_facet Abass, Ahmed
Bell, James S.
Spang, Martin T.
Hayes, Sally
Meek, Keith M.
Boote, Craig
author_sort Abass, Ahmed
collection PubMed
description This article provides an overview of a new integrated software tool for reduction and analysis of small-angle X-ray scattering (SAXS) data from fibrous collagen tissues, with some wider applicability to other cylindrically symmetric scattering systems. SAXS4COLL combines interactive features for data pre-processing, bespoke background subtraction, semi-automated peak detection and calibration. Both equatorial and meridional SAXS peak parameters can be measured, and the former can be deconstructed into cylinder and lattice contributions. Finally, the software combines functionality for determination of collagen spatial order parameters with a rudimentary orientation plot capability.
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spelling pubmed-55413582017-08-14 SAXS4COLL: an integrated software tool for analysing fibrous collagen-based tissues Abass, Ahmed Bell, James S. Spang, Martin T. Hayes, Sally Meek, Keith M. Boote, Craig J Appl Crystallogr Computer Programs This article provides an overview of a new integrated software tool for reduction and analysis of small-angle X-ray scattering (SAXS) data from fibrous collagen tissues, with some wider applicability to other cylindrically symmetric scattering systems. SAXS4COLL combines interactive features for data pre-processing, bespoke background subtraction, semi-automated peak detection and calibration. Both equatorial and meridional SAXS peak parameters can be measured, and the former can be deconstructed into cylinder and lattice contributions. Finally, the software combines functionality for determination of collagen spatial order parameters with a rudimentary orientation plot capability. International Union of Crystallography 2017-07-07 /pmc/articles/PMC5541358/ /pubmed/28808439 http://dx.doi.org/10.1107/S1600576717007877 Text en © Ahmed Abass et al. 2017 http://creativecommons.org/licenses/by/2.0/uk/ This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.http://creativecommons.org/licenses/by/2.0/uk/
spellingShingle Computer Programs
Abass, Ahmed
Bell, James S.
Spang, Martin T.
Hayes, Sally
Meek, Keith M.
Boote, Craig
SAXS4COLL: an integrated software tool for analysing fibrous collagen-based tissues
title SAXS4COLL: an integrated software tool for analysing fibrous collagen-based tissues
title_full SAXS4COLL: an integrated software tool for analysing fibrous collagen-based tissues
title_fullStr SAXS4COLL: an integrated software tool for analysing fibrous collagen-based tissues
title_full_unstemmed SAXS4COLL: an integrated software tool for analysing fibrous collagen-based tissues
title_short SAXS4COLL: an integrated software tool for analysing fibrous collagen-based tissues
title_sort saxs4coll: an integrated software tool for analysing fibrous collagen-based tissues
topic Computer Programs
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5541358/
https://www.ncbi.nlm.nih.gov/pubmed/28808439
http://dx.doi.org/10.1107/S1600576717007877
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