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Machine learning landscapes and predictions for patient outcomes
The theory and computational tools developed to interpret and explore energy landscapes in molecular science are applied to the landscapes defined by local minima for neural networks. These machine learning landscapes correspond to fits of training data, where the inputs are vital signs and laborato...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
The Royal Society Publishing
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5541539/ https://www.ncbi.nlm.nih.gov/pubmed/28791144 http://dx.doi.org/10.1098/rsos.170175 |
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author | Das, Ritankar Wales, David J. |
author_facet | Das, Ritankar Wales, David J. |
author_sort | Das, Ritankar |
collection | PubMed |
description | The theory and computational tools developed to interpret and explore energy landscapes in molecular science are applied to the landscapes defined by local minima for neural networks. These machine learning landscapes correspond to fits of training data, where the inputs are vital signs and laboratory measurements for a database of patients, and the objective is to predict a clinical outcome. In this contribution, we test the predictions obtained by fitting to single measurements, and then to combinations of between 2 and 10 different patient medical data items. The effect of including measurements over different time intervals from the 48 h period in question is analysed, and the most recent values are found to be the most important. We also compare results obtained for neural networks as a function of the number of hidden nodes, and for different values of a regularization parameter. The predictions are compared with an alternative convex fitting function, and a strong correlation is observed. The dependence of these results on the patients randomly selected for training and testing decreases systematically with the size of the database available. The machine learning landscapes defined by neural network fits in this investigation have single-funnel character, which probably explains why it is relatively straightforward to obtain the global minimum solution, or a fit that behaves similarly to this optimal parameterization. |
format | Online Article Text |
id | pubmed-5541539 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | The Royal Society Publishing |
record_format | MEDLINE/PubMed |
spelling | pubmed-55415392017-08-08 Machine learning landscapes and predictions for patient outcomes Das, Ritankar Wales, David J. R Soc Open Sci Chemistry The theory and computational tools developed to interpret and explore energy landscapes in molecular science are applied to the landscapes defined by local minima for neural networks. These machine learning landscapes correspond to fits of training data, where the inputs are vital signs and laboratory measurements for a database of patients, and the objective is to predict a clinical outcome. In this contribution, we test the predictions obtained by fitting to single measurements, and then to combinations of between 2 and 10 different patient medical data items. The effect of including measurements over different time intervals from the 48 h period in question is analysed, and the most recent values are found to be the most important. We also compare results obtained for neural networks as a function of the number of hidden nodes, and for different values of a regularization parameter. The predictions are compared with an alternative convex fitting function, and a strong correlation is observed. The dependence of these results on the patients randomly selected for training and testing decreases systematically with the size of the database available. The machine learning landscapes defined by neural network fits in this investigation have single-funnel character, which probably explains why it is relatively straightforward to obtain the global minimum solution, or a fit that behaves similarly to this optimal parameterization. The Royal Society Publishing 2017-07-26 /pmc/articles/PMC5541539/ /pubmed/28791144 http://dx.doi.org/10.1098/rsos.170175 Text en © 2017 The Authors. http://creativecommons.org/licenses/by/4.0/ Published by the Royal Society under the terms of the Creative Commons Attribution License http://creativecommons.org/licenses/by/4.0/, which permits unrestricted use, provided the original author and source are credited. |
spellingShingle | Chemistry Das, Ritankar Wales, David J. Machine learning landscapes and predictions for patient outcomes |
title | Machine learning landscapes and predictions for patient outcomes |
title_full | Machine learning landscapes and predictions for patient outcomes |
title_fullStr | Machine learning landscapes and predictions for patient outcomes |
title_full_unstemmed | Machine learning landscapes and predictions for patient outcomes |
title_short | Machine learning landscapes and predictions for patient outcomes |
title_sort | machine learning landscapes and predictions for patient outcomes |
topic | Chemistry |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5541539/ https://www.ncbi.nlm.nih.gov/pubmed/28791144 http://dx.doi.org/10.1098/rsos.170175 |
work_keys_str_mv | AT dasritankar machinelearninglandscapesandpredictionsforpatientoutcomes AT walesdavidj machinelearninglandscapesandpredictionsforpatientoutcomes |