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Machine learning landscapes and predictions for patient outcomes

The theory and computational tools developed to interpret and explore energy landscapes in molecular science are applied to the landscapes defined by local minima for neural networks. These machine learning landscapes correspond to fits of training data, where the inputs are vital signs and laborato...

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Detalles Bibliográficos
Autores principales: Das, Ritankar, Wales, David J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: The Royal Society Publishing 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5541539/
https://www.ncbi.nlm.nih.gov/pubmed/28791144
http://dx.doi.org/10.1098/rsos.170175
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author Das, Ritankar
Wales, David J.
author_facet Das, Ritankar
Wales, David J.
author_sort Das, Ritankar
collection PubMed
description The theory and computational tools developed to interpret and explore energy landscapes in molecular science are applied to the landscapes defined by local minima for neural networks. These machine learning landscapes correspond to fits of training data, where the inputs are vital signs and laboratory measurements for a database of patients, and the objective is to predict a clinical outcome. In this contribution, we test the predictions obtained by fitting to single measurements, and then to combinations of between 2 and 10 different patient medical data items. The effect of including measurements over different time intervals from the 48 h period in question is analysed, and the most recent values are found to be the most important. We also compare results obtained for neural networks as a function of the number of hidden nodes, and for different values of a regularization parameter. The predictions are compared with an alternative convex fitting function, and a strong correlation is observed. The dependence of these results on the patients randomly selected for training and testing decreases systematically with the size of the database available. The machine learning landscapes defined by neural network fits in this investigation have single-funnel character, which probably explains why it is relatively straightforward to obtain the global minimum solution, or a fit that behaves similarly to this optimal parameterization.
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spelling pubmed-55415392017-08-08 Machine learning landscapes and predictions for patient outcomes Das, Ritankar Wales, David J. R Soc Open Sci Chemistry The theory and computational tools developed to interpret and explore energy landscapes in molecular science are applied to the landscapes defined by local minima for neural networks. These machine learning landscapes correspond to fits of training data, where the inputs are vital signs and laboratory measurements for a database of patients, and the objective is to predict a clinical outcome. In this contribution, we test the predictions obtained by fitting to single measurements, and then to combinations of between 2 and 10 different patient medical data items. The effect of including measurements over different time intervals from the 48 h period in question is analysed, and the most recent values are found to be the most important. We also compare results obtained for neural networks as a function of the number of hidden nodes, and for different values of a regularization parameter. The predictions are compared with an alternative convex fitting function, and a strong correlation is observed. The dependence of these results on the patients randomly selected for training and testing decreases systematically with the size of the database available. The machine learning landscapes defined by neural network fits in this investigation have single-funnel character, which probably explains why it is relatively straightforward to obtain the global minimum solution, or a fit that behaves similarly to this optimal parameterization. The Royal Society Publishing 2017-07-26 /pmc/articles/PMC5541539/ /pubmed/28791144 http://dx.doi.org/10.1098/rsos.170175 Text en © 2017 The Authors. http://creativecommons.org/licenses/by/4.0/ Published by the Royal Society under the terms of the Creative Commons Attribution License http://creativecommons.org/licenses/by/4.0/, which permits unrestricted use, provided the original author and source are credited.
spellingShingle Chemistry
Das, Ritankar
Wales, David J.
Machine learning landscapes and predictions for patient outcomes
title Machine learning landscapes and predictions for patient outcomes
title_full Machine learning landscapes and predictions for patient outcomes
title_fullStr Machine learning landscapes and predictions for patient outcomes
title_full_unstemmed Machine learning landscapes and predictions for patient outcomes
title_short Machine learning landscapes and predictions for patient outcomes
title_sort machine learning landscapes and predictions for patient outcomes
topic Chemistry
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5541539/
https://www.ncbi.nlm.nih.gov/pubmed/28791144
http://dx.doi.org/10.1098/rsos.170175
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