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SiNC: Saliency-injected neural codes for representation and efficient retrieval of medical radiographs

Medical image collections contain a wealth of information which can assist radiologists and medical experts in diagnosis and disease detection for making well-informed decisions. However, this objective can only be realized if efficient access is provided to semantically relevant cases from the ever...

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Detalles Bibliográficos
Autores principales: Ahmad, Jamil, Sajjad, Muhammad, Mehmood, Irfan, Baik, Sung Wook
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5542646/
https://www.ncbi.nlm.nih.gov/pubmed/28771497
http://dx.doi.org/10.1371/journal.pone.0181707
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author Ahmad, Jamil
Sajjad, Muhammad
Mehmood, Irfan
Baik, Sung Wook
author_facet Ahmad, Jamil
Sajjad, Muhammad
Mehmood, Irfan
Baik, Sung Wook
author_sort Ahmad, Jamil
collection PubMed
description Medical image collections contain a wealth of information which can assist radiologists and medical experts in diagnosis and disease detection for making well-informed decisions. However, this objective can only be realized if efficient access is provided to semantically relevant cases from the ever-growing medical image repositories. In this paper, we present an efficient method for representing medical images by incorporating visual saliency and deep features obtained from a fine-tuned convolutional neural network (CNN) pre-trained on natural images. Saliency detector is employed to automatically identify regions of interest like tumors, fractures, and calcified spots in images prior to feature extraction. Neuronal activation features termed as neural codes from different CNN layers are comprehensively studied to identify most appropriate features for representing radiographs. This study revealed that neural codes from the last fully connected layer of the fine-tuned CNN are found to be the most suitable for representing medical images. The neural codes extracted from the entire image and salient part of the image are fused to obtain the saliency-injected neural codes (SiNC) descriptor which is used for indexing and retrieval. Finally, locality sensitive hashing techniques are applied on the SiNC descriptor to acquire short binary codes for allowing efficient retrieval in large scale image collections. Comprehensive experimental evaluations on the radiology images dataset reveal that the proposed framework achieves high retrieval accuracy and efficiency for scalable image retrieval applications and compares favorably with existing approaches.
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spelling pubmed-55426462017-08-12 SiNC: Saliency-injected neural codes for representation and efficient retrieval of medical radiographs Ahmad, Jamil Sajjad, Muhammad Mehmood, Irfan Baik, Sung Wook PLoS One Research Article Medical image collections contain a wealth of information which can assist radiologists and medical experts in diagnosis and disease detection for making well-informed decisions. However, this objective can only be realized if efficient access is provided to semantically relevant cases from the ever-growing medical image repositories. In this paper, we present an efficient method for representing medical images by incorporating visual saliency and deep features obtained from a fine-tuned convolutional neural network (CNN) pre-trained on natural images. Saliency detector is employed to automatically identify regions of interest like tumors, fractures, and calcified spots in images prior to feature extraction. Neuronal activation features termed as neural codes from different CNN layers are comprehensively studied to identify most appropriate features for representing radiographs. This study revealed that neural codes from the last fully connected layer of the fine-tuned CNN are found to be the most suitable for representing medical images. The neural codes extracted from the entire image and salient part of the image are fused to obtain the saliency-injected neural codes (SiNC) descriptor which is used for indexing and retrieval. Finally, locality sensitive hashing techniques are applied on the SiNC descriptor to acquire short binary codes for allowing efficient retrieval in large scale image collections. Comprehensive experimental evaluations on the radiology images dataset reveal that the proposed framework achieves high retrieval accuracy and efficiency for scalable image retrieval applications and compares favorably with existing approaches. Public Library of Science 2017-08-03 /pmc/articles/PMC5542646/ /pubmed/28771497 http://dx.doi.org/10.1371/journal.pone.0181707 Text en © 2017 Ahmad et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Ahmad, Jamil
Sajjad, Muhammad
Mehmood, Irfan
Baik, Sung Wook
SiNC: Saliency-injected neural codes for representation and efficient retrieval of medical radiographs
title SiNC: Saliency-injected neural codes for representation and efficient retrieval of medical radiographs
title_full SiNC: Saliency-injected neural codes for representation and efficient retrieval of medical radiographs
title_fullStr SiNC: Saliency-injected neural codes for representation and efficient retrieval of medical radiographs
title_full_unstemmed SiNC: Saliency-injected neural codes for representation and efficient retrieval of medical radiographs
title_short SiNC: Saliency-injected neural codes for representation and efficient retrieval of medical radiographs
title_sort sinc: saliency-injected neural codes for representation and efficient retrieval of medical radiographs
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5542646/
https://www.ncbi.nlm.nih.gov/pubmed/28771497
http://dx.doi.org/10.1371/journal.pone.0181707
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