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NuBBE(DB): an updated database to uncover chemical and biological information from Brazilian biodiversity

The intrinsic value of biodiversity extends beyond species diversity, genetic heritage, ecosystem variability and ecological services, such as climate regulation, water quality, nutrient cycling and the provision of reproductive habitats it is also an inexhaustible source of molecules and products b...

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Autores principales: Pilon, Alan C., Valli, Marilia, Dametto, Alessandra C., Pinto, Meri Emili F., Freire, Rafael T., Castro-Gamboa, Ian, Andricopulo, Adriano D., Bolzani, Vanderlan S.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5543130/
https://www.ncbi.nlm.nih.gov/pubmed/28775335
http://dx.doi.org/10.1038/s41598-017-07451-x
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author Pilon, Alan C.
Valli, Marilia
Dametto, Alessandra C.
Pinto, Meri Emili F.
Freire, Rafael T.
Castro-Gamboa, Ian
Andricopulo, Adriano D.
Bolzani, Vanderlan S.
author_facet Pilon, Alan C.
Valli, Marilia
Dametto, Alessandra C.
Pinto, Meri Emili F.
Freire, Rafael T.
Castro-Gamboa, Ian
Andricopulo, Adriano D.
Bolzani, Vanderlan S.
author_sort Pilon, Alan C.
collection PubMed
description The intrinsic value of biodiversity extends beyond species diversity, genetic heritage, ecosystem variability and ecological services, such as climate regulation, water quality, nutrient cycling and the provision of reproductive habitats it is also an inexhaustible source of molecules and products beneficial to human well-being. To uncover the chemistry of Brazilian natural products, the Nuclei of Bioassays, Ecophysiology and Biosynthesis of Natural Products Database (NuBBE(DB)) was created as the first natural product library from Brazilian biodiversity. Since its launch in 2013, the NuBBE(DB) has proven to be an important resource for new drug design and dereplication studies. Consequently, continuous efforts have been made to expand its contents and include a greater diversity of natural sources to establish it as a comprehensive compendium of available biogeochemical information about Brazilian biodiversity. The content in the NuBBE(DB) is freely accessible online (https://nubbe.iq.unesp.br/portal/nubbedb.html) and provides validated multidisciplinary information, chemical descriptors, species sources, geographic locations, spectroscopic data (NMR) and pharmacological properties. Herein, we report the latest advancements concerning the interface, content and functionality of the NuBBE(DB). We also present a preliminary study on the current profile of the compounds present in Brazilian territory.
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spelling pubmed-55431302017-08-07 NuBBE(DB): an updated database to uncover chemical and biological information from Brazilian biodiversity Pilon, Alan C. Valli, Marilia Dametto, Alessandra C. Pinto, Meri Emili F. Freire, Rafael T. Castro-Gamboa, Ian Andricopulo, Adriano D. Bolzani, Vanderlan S. Sci Rep Article The intrinsic value of biodiversity extends beyond species diversity, genetic heritage, ecosystem variability and ecological services, such as climate regulation, water quality, nutrient cycling and the provision of reproductive habitats it is also an inexhaustible source of molecules and products beneficial to human well-being. To uncover the chemistry of Brazilian natural products, the Nuclei of Bioassays, Ecophysiology and Biosynthesis of Natural Products Database (NuBBE(DB)) was created as the first natural product library from Brazilian biodiversity. Since its launch in 2013, the NuBBE(DB) has proven to be an important resource for new drug design and dereplication studies. Consequently, continuous efforts have been made to expand its contents and include a greater diversity of natural sources to establish it as a comprehensive compendium of available biogeochemical information about Brazilian biodiversity. The content in the NuBBE(DB) is freely accessible online (https://nubbe.iq.unesp.br/portal/nubbedb.html) and provides validated multidisciplinary information, chemical descriptors, species sources, geographic locations, spectroscopic data (NMR) and pharmacological properties. Herein, we report the latest advancements concerning the interface, content and functionality of the NuBBE(DB). We also present a preliminary study on the current profile of the compounds present in Brazilian territory. Nature Publishing Group UK 2017-08-03 /pmc/articles/PMC5543130/ /pubmed/28775335 http://dx.doi.org/10.1038/s41598-017-07451-x Text en © The Author(s) 2017 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Pilon, Alan C.
Valli, Marilia
Dametto, Alessandra C.
Pinto, Meri Emili F.
Freire, Rafael T.
Castro-Gamboa, Ian
Andricopulo, Adriano D.
Bolzani, Vanderlan S.
NuBBE(DB): an updated database to uncover chemical and biological information from Brazilian biodiversity
title NuBBE(DB): an updated database to uncover chemical and biological information from Brazilian biodiversity
title_full NuBBE(DB): an updated database to uncover chemical and biological information from Brazilian biodiversity
title_fullStr NuBBE(DB): an updated database to uncover chemical and biological information from Brazilian biodiversity
title_full_unstemmed NuBBE(DB): an updated database to uncover chemical and biological information from Brazilian biodiversity
title_short NuBBE(DB): an updated database to uncover chemical and biological information from Brazilian biodiversity
title_sort nubbe(db): an updated database to uncover chemical and biological information from brazilian biodiversity
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5543130/
https://www.ncbi.nlm.nih.gov/pubmed/28775335
http://dx.doi.org/10.1038/s41598-017-07451-x
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