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Combining Kernel and Model Based Learning for HIV Therapy Selection

We present a mixture-of-experts approach for HIV therapy selection. The heterogeneity in patient data makes it difficult for one particular model to succeed at providing suitable therapy predictions for all patients. An appropriate means for addressing this heterogeneity is through combining kernel...

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Detalles Bibliográficos
Autores principales: Parbhoo, Sonali, Bogojeska, Jasmina, Zazzi, Maurizio, Roth, Volker, Doshi-Velez, Finale
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Medical Informatics Association 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5543338/
https://www.ncbi.nlm.nih.gov/pubmed/28815137
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author Parbhoo, Sonali
Bogojeska, Jasmina
Zazzi, Maurizio
Roth, Volker
Doshi-Velez, Finale
author_facet Parbhoo, Sonali
Bogojeska, Jasmina
Zazzi, Maurizio
Roth, Volker
Doshi-Velez, Finale
author_sort Parbhoo, Sonali
collection PubMed
description We present a mixture-of-experts approach for HIV therapy selection. The heterogeneity in patient data makes it difficult for one particular model to succeed at providing suitable therapy predictions for all patients. An appropriate means for addressing this heterogeneity is through combining kernel and model-based techniques. These methods capture different kinds of information: kernel-based methods are able to identify clusters of similar patients, and work well when modelling the viral response for these groups. In contrast, model-based methods capture the sequential process of decision making, and are able to find simpler, yet accurate patterns in response for patients outside these groups. We take advantage of this information by proposing a mixture-of-experts model that automatically selects between the methods in order to assign the most appropriate therapy choice to an individual. Overall, we verify that therapy combinations proposed using this approach significantly outperform previous methods.
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spelling pubmed-55433382017-08-16 Combining Kernel and Model Based Learning for HIV Therapy Selection Parbhoo, Sonali Bogojeska, Jasmina Zazzi, Maurizio Roth, Volker Doshi-Velez, Finale AMIA Jt Summits Transl Sci Proc Articles We present a mixture-of-experts approach for HIV therapy selection. The heterogeneity in patient data makes it difficult for one particular model to succeed at providing suitable therapy predictions for all patients. An appropriate means for addressing this heterogeneity is through combining kernel and model-based techniques. These methods capture different kinds of information: kernel-based methods are able to identify clusters of similar patients, and work well when modelling the viral response for these groups. In contrast, model-based methods capture the sequential process of decision making, and are able to find simpler, yet accurate patterns in response for patients outside these groups. We take advantage of this information by proposing a mixture-of-experts model that automatically selects between the methods in order to assign the most appropriate therapy choice to an individual. Overall, we verify that therapy combinations proposed using this approach significantly outperform previous methods. American Medical Informatics Association 2017-07-26 /pmc/articles/PMC5543338/ /pubmed/28815137 Text en ©2017 AMIA - All rights reserved. This is an Open Access article: verbatim copying and redistribution of this article are permitted in all media for any purpose
spellingShingle Articles
Parbhoo, Sonali
Bogojeska, Jasmina
Zazzi, Maurizio
Roth, Volker
Doshi-Velez, Finale
Combining Kernel and Model Based Learning for HIV Therapy Selection
title Combining Kernel and Model Based Learning for HIV Therapy Selection
title_full Combining Kernel and Model Based Learning for HIV Therapy Selection
title_fullStr Combining Kernel and Model Based Learning for HIV Therapy Selection
title_full_unstemmed Combining Kernel and Model Based Learning for HIV Therapy Selection
title_short Combining Kernel and Model Based Learning for HIV Therapy Selection
title_sort combining kernel and model based learning for hiv therapy selection
topic Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5543338/
https://www.ncbi.nlm.nih.gov/pubmed/28815137
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