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Towards Generation, Management, and Exploration of Combined Radiomics and Pathomics Datasets for Cancer Research

Cancer is a complex multifactorial disease state and the ability to anticipate and steer treatment results will require information synthesis across multiple scales from the host to the molecular level. Radiomics and Pathomics, where image features are extracted from routine diagnostic Radiology and...

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Autores principales: Saltz, Joel, Almeida, Jonas, Gao, Yi, Sharma, Ashish, Bremer, Erich, DiPrima, Tammy, Saltz, Mary, Kalpathy-Cramer, Jayashree, Kurc, Tahsin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Medical Informatics Association 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5543366/
https://www.ncbi.nlm.nih.gov/pubmed/28815113
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author Saltz, Joel
Almeida, Jonas
Gao, Yi
Sharma, Ashish
Bremer, Erich
DiPrima, Tammy
Saltz, Mary
Kalpathy-Cramer, Jayashree
Kurc, Tahsin
author_facet Saltz, Joel
Almeida, Jonas
Gao, Yi
Sharma, Ashish
Bremer, Erich
DiPrima, Tammy
Saltz, Mary
Kalpathy-Cramer, Jayashree
Kurc, Tahsin
author_sort Saltz, Joel
collection PubMed
description Cancer is a complex multifactorial disease state and the ability to anticipate and steer treatment results will require information synthesis across multiple scales from the host to the molecular level. Radiomics and Pathomics, where image features are extracted from routine diagnostic Radiology and Pathology studies, are also evolving as valuable diagnostic and prognostic indicators in cancer. This information explosion provides new opportunities for integrated, multi-scale investigation of cancer, but also mandates a need to build systematic and integrated approaches to manage, query and mine combined Radiomics and Pathomics data. In this paper, we describe a suite of tools and web-based applications towards building a comprehensive framework to support the generation, management and interrogation of large volumes of Radiomics and Pathomics feature sets and the investigation of correlations between image features, molecular data, and clinical outcome.
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spelling pubmed-55433662017-08-16 Towards Generation, Management, and Exploration of Combined Radiomics and Pathomics Datasets for Cancer Research Saltz, Joel Almeida, Jonas Gao, Yi Sharma, Ashish Bremer, Erich DiPrima, Tammy Saltz, Mary Kalpathy-Cramer, Jayashree Kurc, Tahsin AMIA Jt Summits Transl Sci Proc Articles Cancer is a complex multifactorial disease state and the ability to anticipate and steer treatment results will require information synthesis across multiple scales from the host to the molecular level. Radiomics and Pathomics, where image features are extracted from routine diagnostic Radiology and Pathology studies, are also evolving as valuable diagnostic and prognostic indicators in cancer. This information explosion provides new opportunities for integrated, multi-scale investigation of cancer, but also mandates a need to build systematic and integrated approaches to manage, query and mine combined Radiomics and Pathomics data. In this paper, we describe a suite of tools and web-based applications towards building a comprehensive framework to support the generation, management and interrogation of large volumes of Radiomics and Pathomics feature sets and the investigation of correlations between image features, molecular data, and clinical outcome. American Medical Informatics Association 2017-07-26 /pmc/articles/PMC5543366/ /pubmed/28815113 Text en ©2017 AMIA - All rights reserved. This is an Open Access article: verbatim copying and redistribution of this article are permitted in all media for any purpose
spellingShingle Articles
Saltz, Joel
Almeida, Jonas
Gao, Yi
Sharma, Ashish
Bremer, Erich
DiPrima, Tammy
Saltz, Mary
Kalpathy-Cramer, Jayashree
Kurc, Tahsin
Towards Generation, Management, and Exploration of Combined Radiomics and Pathomics Datasets for Cancer Research
title Towards Generation, Management, and Exploration of Combined Radiomics and Pathomics Datasets for Cancer Research
title_full Towards Generation, Management, and Exploration of Combined Radiomics and Pathomics Datasets for Cancer Research
title_fullStr Towards Generation, Management, and Exploration of Combined Radiomics and Pathomics Datasets for Cancer Research
title_full_unstemmed Towards Generation, Management, and Exploration of Combined Radiomics and Pathomics Datasets for Cancer Research
title_short Towards Generation, Management, and Exploration of Combined Radiomics and Pathomics Datasets for Cancer Research
title_sort towards generation, management, and exploration of combined radiomics and pathomics datasets for cancer research
topic Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5543366/
https://www.ncbi.nlm.nih.gov/pubmed/28815113
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