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A Clinical Decision Support System for Monitoring Post-Colonoscopy Patient Follow-Up and Scheduling

This paper describes a natural language processing (NLP)-based clinical decision support (CDS) system that is geared towards colon cancer care coordinators as the end users. The system is implemented using a metadata- driven Structured Query Language (SQL) function (discriminant function). For our p...

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Autores principales: Wadia, Roxanne, Shifman, Mark, Levin, Forrest L., Marenco, Luis, Brandt, Cynthia A., Cheung, Kei-Hoi, Taddei, Tamar, Krauthammer, Michael
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Medical Informatics Association 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5543375/
https://www.ncbi.nlm.nih.gov/pubmed/28815144
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author Wadia, Roxanne
Shifman, Mark
Levin, Forrest L.
Marenco, Luis
Brandt, Cynthia A.
Cheung, Kei-Hoi
Taddei, Tamar
Krauthammer, Michael
author_facet Wadia, Roxanne
Shifman, Mark
Levin, Forrest L.
Marenco, Luis
Brandt, Cynthia A.
Cheung, Kei-Hoi
Taddei, Tamar
Krauthammer, Michael
author_sort Wadia, Roxanne
collection PubMed
description This paper describes a natural language processing (NLP)-based clinical decision support (CDS) system that is geared towards colon cancer care coordinators as the end users. The system is implemented using a metadata- driven Structured Query Language (SQL) function (discriminant function). For our pilot study, we have developed a training corpus consisting of 2,085 pathology reports from the VA Connecticut Health Care System (VACHS). We categorized reports as “actionable”- requiring close follow up, or “non-actionable”- requiring standard or no follow up. We then used 600 distinct pathology reports from 6 different VA sites as our test corpus. Analysis of our test corpus shows that our NLP approach yields 98.5% accuracy in identifying cases that required close clinical follow up. By integrating this into our cancer care tracking system, our goal is to ensure that patients with worrisome pathology receive appropriate and timely follow-up and care.
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spelling pubmed-55433752017-08-16 A Clinical Decision Support System for Monitoring Post-Colonoscopy Patient Follow-Up and Scheduling Wadia, Roxanne Shifman, Mark Levin, Forrest L. Marenco, Luis Brandt, Cynthia A. Cheung, Kei-Hoi Taddei, Tamar Krauthammer, Michael AMIA Jt Summits Transl Sci Proc Articles This paper describes a natural language processing (NLP)-based clinical decision support (CDS) system that is geared towards colon cancer care coordinators as the end users. The system is implemented using a metadata- driven Structured Query Language (SQL) function (discriminant function). For our pilot study, we have developed a training corpus consisting of 2,085 pathology reports from the VA Connecticut Health Care System (VACHS). We categorized reports as “actionable”- requiring close follow up, or “non-actionable”- requiring standard or no follow up. We then used 600 distinct pathology reports from 6 different VA sites as our test corpus. Analysis of our test corpus shows that our NLP approach yields 98.5% accuracy in identifying cases that required close clinical follow up. By integrating this into our cancer care tracking system, our goal is to ensure that patients with worrisome pathology receive appropriate and timely follow-up and care. American Medical Informatics Association 2017-07-26 /pmc/articles/PMC5543375/ /pubmed/28815144 Text en ©2017 AMIA - All rights reserved. This is an Open Access article: verbatim copying and redistribution of this article are permitted in all media for any purpose
spellingShingle Articles
Wadia, Roxanne
Shifman, Mark
Levin, Forrest L.
Marenco, Luis
Brandt, Cynthia A.
Cheung, Kei-Hoi
Taddei, Tamar
Krauthammer, Michael
A Clinical Decision Support System for Monitoring Post-Colonoscopy Patient Follow-Up and Scheduling
title A Clinical Decision Support System for Monitoring Post-Colonoscopy Patient Follow-Up and Scheduling
title_full A Clinical Decision Support System for Monitoring Post-Colonoscopy Patient Follow-Up and Scheduling
title_fullStr A Clinical Decision Support System for Monitoring Post-Colonoscopy Patient Follow-Up and Scheduling
title_full_unstemmed A Clinical Decision Support System for Monitoring Post-Colonoscopy Patient Follow-Up and Scheduling
title_short A Clinical Decision Support System for Monitoring Post-Colonoscopy Patient Follow-Up and Scheduling
title_sort clinical decision support system for monitoring post-colonoscopy patient follow-up and scheduling
topic Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5543375/
https://www.ncbi.nlm.nih.gov/pubmed/28815144
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