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Development and characterization of microsatellite primers for Zanthoxylum schinifolium (Rutaceae)(1)
PREMISE OF THE STUDY: Polymorphic microsatellite markers of Zanthoxylum schinifolium (Rutaceae), a promising medicinal plant with effective antibacterial, anticancer, and anti-inflammatory compounds, were developed and evaluated for further genetic studies based on genetic variation among individual...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Botanical Society of America
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5546163/ https://www.ncbi.nlm.nih.gov/pubmed/28791203 http://dx.doi.org/10.3732/apps.1600145 |
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author | Kim, Young Mi Jo, Aruna Jeong, Ji Hee Kwon, Yong Rak Kim, Ho Bang |
author_facet | Kim, Young Mi Jo, Aruna Jeong, Ji Hee Kwon, Yong Rak Kim, Ho Bang |
author_sort | Kim, Young Mi |
collection | PubMed |
description | PREMISE OF THE STUDY: Polymorphic microsatellite markers of Zanthoxylum schinifolium (Rutaceae), a promising medicinal plant with effective antibacterial, anticancer, and anti-inflammatory compounds, were developed and evaluated for further genetic studies based on genetic variation among individuals or populations. METHODS AND RESULTS: Following the selective hybridization method, microsatellite-enrichment libraries were constructed. Using these libraries, we obtained 15 polymorphic and three monomorphic microsatellite markers for Z. schinifolium. The number of alleles observed in each of the 15 polymorphic loci ranged from two to eight, and the observed and expected heterozygosities ranged from 0.070 to 0.677 and from 0.093 to 0.688, respectively. Eleven of these developed markers were successfully amplified for Z. piperitum, a related species. CONCLUSIONS: These microsatellite markers can be valuable tools for further genetic studies of Z. schinifolium, such as genetic resource conservation for maintaining breeding material and individual identification for breeding program improvement and variety management. |
format | Online Article Text |
id | pubmed-5546163 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Botanical Society of America |
record_format | MEDLINE/PubMed |
spelling | pubmed-55461632017-08-08 Development and characterization of microsatellite primers for Zanthoxylum schinifolium (Rutaceae)(1) Kim, Young Mi Jo, Aruna Jeong, Ji Hee Kwon, Yong Rak Kim, Ho Bang Appl Plant Sci Primer Note PREMISE OF THE STUDY: Polymorphic microsatellite markers of Zanthoxylum schinifolium (Rutaceae), a promising medicinal plant with effective antibacterial, anticancer, and anti-inflammatory compounds, were developed and evaluated for further genetic studies based on genetic variation among individuals or populations. METHODS AND RESULTS: Following the selective hybridization method, microsatellite-enrichment libraries were constructed. Using these libraries, we obtained 15 polymorphic and three monomorphic microsatellite markers for Z. schinifolium. The number of alleles observed in each of the 15 polymorphic loci ranged from two to eight, and the observed and expected heterozygosities ranged from 0.070 to 0.677 and from 0.093 to 0.688, respectively. Eleven of these developed markers were successfully amplified for Z. piperitum, a related species. CONCLUSIONS: These microsatellite markers can be valuable tools for further genetic studies of Z. schinifolium, such as genetic resource conservation for maintaining breeding material and individual identification for breeding program improvement and variety management. Botanical Society of America 2017-07-24 /pmc/articles/PMC5546163/ /pubmed/28791203 http://dx.doi.org/10.3732/apps.1600145 Text en © 2017 Kim et al. Published by the Botanical Society of America https://creativecommons.org/licenses/by-nc-sa/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (CC-BY-NC-SA 4.0 (https://creativecommons.org/licenses/by-nc-sa/4.0/) ), which permits unrestricted noncommercial use and redistribution provided that the original author and source are credited and the new work is distributed under the same license as the original. |
spellingShingle | Primer Note Kim, Young Mi Jo, Aruna Jeong, Ji Hee Kwon, Yong Rak Kim, Ho Bang Development and characterization of microsatellite primers for Zanthoxylum schinifolium (Rutaceae)(1) |
title | Development and characterization of microsatellite primers for Zanthoxylum schinifolium (Rutaceae)(1) |
title_full | Development and characterization of microsatellite primers for Zanthoxylum schinifolium (Rutaceae)(1) |
title_fullStr | Development and characterization of microsatellite primers for Zanthoxylum schinifolium (Rutaceae)(1) |
title_full_unstemmed | Development and characterization of microsatellite primers for Zanthoxylum schinifolium (Rutaceae)(1) |
title_short | Development and characterization of microsatellite primers for Zanthoxylum schinifolium (Rutaceae)(1) |
title_sort | development and characterization of microsatellite primers for zanthoxylum schinifolium (rutaceae)(1) |
topic | Primer Note |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5546163/ https://www.ncbi.nlm.nih.gov/pubmed/28791203 http://dx.doi.org/10.3732/apps.1600145 |
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