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Development and characterization of microsatellite primers for Zanthoxylum schinifolium (Rutaceae)(1)

PREMISE OF THE STUDY: Polymorphic microsatellite markers of Zanthoxylum schinifolium (Rutaceae), a promising medicinal plant with effective antibacterial, anticancer, and anti-inflammatory compounds, were developed and evaluated for further genetic studies based on genetic variation among individual...

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Autores principales: Kim, Young Mi, Jo, Aruna, Jeong, Ji Hee, Kwon, Yong Rak, Kim, Ho Bang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Botanical Society of America 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5546163/
https://www.ncbi.nlm.nih.gov/pubmed/28791203
http://dx.doi.org/10.3732/apps.1600145
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author Kim, Young Mi
Jo, Aruna
Jeong, Ji Hee
Kwon, Yong Rak
Kim, Ho Bang
author_facet Kim, Young Mi
Jo, Aruna
Jeong, Ji Hee
Kwon, Yong Rak
Kim, Ho Bang
author_sort Kim, Young Mi
collection PubMed
description PREMISE OF THE STUDY: Polymorphic microsatellite markers of Zanthoxylum schinifolium (Rutaceae), a promising medicinal plant with effective antibacterial, anticancer, and anti-inflammatory compounds, were developed and evaluated for further genetic studies based on genetic variation among individuals or populations. METHODS AND RESULTS: Following the selective hybridization method, microsatellite-enrichment libraries were constructed. Using these libraries, we obtained 15 polymorphic and three monomorphic microsatellite markers for Z. schinifolium. The number of alleles observed in each of the 15 polymorphic loci ranged from two to eight, and the observed and expected heterozygosities ranged from 0.070 to 0.677 and from 0.093 to 0.688, respectively. Eleven of these developed markers were successfully amplified for Z. piperitum, a related species. CONCLUSIONS: These microsatellite markers can be valuable tools for further genetic studies of Z. schinifolium, such as genetic resource conservation for maintaining breeding material and individual identification for breeding program improvement and variety management.
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spelling pubmed-55461632017-08-08 Development and characterization of microsatellite primers for Zanthoxylum schinifolium (Rutaceae)(1) Kim, Young Mi Jo, Aruna Jeong, Ji Hee Kwon, Yong Rak Kim, Ho Bang Appl Plant Sci Primer Note PREMISE OF THE STUDY: Polymorphic microsatellite markers of Zanthoxylum schinifolium (Rutaceae), a promising medicinal plant with effective antibacterial, anticancer, and anti-inflammatory compounds, were developed and evaluated for further genetic studies based on genetic variation among individuals or populations. METHODS AND RESULTS: Following the selective hybridization method, microsatellite-enrichment libraries were constructed. Using these libraries, we obtained 15 polymorphic and three monomorphic microsatellite markers for Z. schinifolium. The number of alleles observed in each of the 15 polymorphic loci ranged from two to eight, and the observed and expected heterozygosities ranged from 0.070 to 0.677 and from 0.093 to 0.688, respectively. Eleven of these developed markers were successfully amplified for Z. piperitum, a related species. CONCLUSIONS: These microsatellite markers can be valuable tools for further genetic studies of Z. schinifolium, such as genetic resource conservation for maintaining breeding material and individual identification for breeding program improvement and variety management. Botanical Society of America 2017-07-24 /pmc/articles/PMC5546163/ /pubmed/28791203 http://dx.doi.org/10.3732/apps.1600145 Text en © 2017 Kim et al. Published by the Botanical Society of America https://creativecommons.org/licenses/by-nc-sa/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (CC-BY-NC-SA 4.0 (https://creativecommons.org/licenses/by-nc-sa/4.0/) ), which permits unrestricted noncommercial use and redistribution provided that the original author and source are credited and the new work is distributed under the same license as the original.
spellingShingle Primer Note
Kim, Young Mi
Jo, Aruna
Jeong, Ji Hee
Kwon, Yong Rak
Kim, Ho Bang
Development and characterization of microsatellite primers for Zanthoxylum schinifolium (Rutaceae)(1)
title Development and characterization of microsatellite primers for Zanthoxylum schinifolium (Rutaceae)(1)
title_full Development and characterization of microsatellite primers for Zanthoxylum schinifolium (Rutaceae)(1)
title_fullStr Development and characterization of microsatellite primers for Zanthoxylum schinifolium (Rutaceae)(1)
title_full_unstemmed Development and characterization of microsatellite primers for Zanthoxylum schinifolium (Rutaceae)(1)
title_short Development and characterization of microsatellite primers for Zanthoxylum schinifolium (Rutaceae)(1)
title_sort development and characterization of microsatellite primers for zanthoxylum schinifolium (rutaceae)(1)
topic Primer Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5546163/
https://www.ncbi.nlm.nih.gov/pubmed/28791203
http://dx.doi.org/10.3732/apps.1600145
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