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Characterization of microsatellite markers in the African tropical tree species Guibourtia ehie (Fabaceae, Detarioideae)(1)
PREMISE OF THE STUDY: Microsatellite primers (simple sequence repeats [SSRs]) were developed in Guibourtia ehie (Fabaceae, Detarioideae) to study population genetic structure and the history of African vegetation. METHODS AND RESULTS: We isolated 18 polymorphic SSRs from a nonenriched genomic librar...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Botanical Society of America
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5546166/ https://www.ncbi.nlm.nih.gov/pubmed/28791206 http://dx.doi.org/10.3732/apps.1700023 |
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author | Tosso, Félicien Doucet, Jean-Louis Migliore, Jérémy Daïnou, Kasso Kaymak, Esra Kameni, Franck S. Monthe Hardy, Olivier J. |
author_facet | Tosso, Félicien Doucet, Jean-Louis Migliore, Jérémy Daïnou, Kasso Kaymak, Esra Kameni, Franck S. Monthe Hardy, Olivier J. |
author_sort | Tosso, Félicien |
collection | PubMed |
description | PREMISE OF THE STUDY: Microsatellite primers (simple sequence repeats [SSRs]) were developed in Guibourtia ehie (Fabaceae, Detarioideae) to study population genetic structure and the history of African vegetation. METHODS AND RESULTS: We isolated 18 polymorphic SSRs from a nonenriched genomic library. This set of primer pairs was tested on four populations, and the results showed two to 16 alleles per locus with mean observed and expected heterozygosities of 0.27 ± 0.05 and 0.57 ± 0.05, respectively. Cross-amplification tests in 13 congeneric species were successful for the four taxa belonging to the subgenus Gorskia. CONCLUSIONS: This set of microsatellite markers will be useful to investigate the phylogeography and population genetics of G. ehie, a key representative of African semideciduous moist forests. |
format | Online Article Text |
id | pubmed-5546166 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Botanical Society of America |
record_format | MEDLINE/PubMed |
spelling | pubmed-55461662017-08-08 Characterization of microsatellite markers in the African tropical tree species Guibourtia ehie (Fabaceae, Detarioideae)(1) Tosso, Félicien Doucet, Jean-Louis Migliore, Jérémy Daïnou, Kasso Kaymak, Esra Kameni, Franck S. Monthe Hardy, Olivier J. Appl Plant Sci Primer Note PREMISE OF THE STUDY: Microsatellite primers (simple sequence repeats [SSRs]) were developed in Guibourtia ehie (Fabaceae, Detarioideae) to study population genetic structure and the history of African vegetation. METHODS AND RESULTS: We isolated 18 polymorphic SSRs from a nonenriched genomic library. This set of primer pairs was tested on four populations, and the results showed two to 16 alleles per locus with mean observed and expected heterozygosities of 0.27 ± 0.05 and 0.57 ± 0.05, respectively. Cross-amplification tests in 13 congeneric species were successful for the four taxa belonging to the subgenus Gorskia. CONCLUSIONS: This set of microsatellite markers will be useful to investigate the phylogeography and population genetics of G. ehie, a key representative of African semideciduous moist forests. Botanical Society of America 2017-07-26 /pmc/articles/PMC5546166/ /pubmed/28791206 http://dx.doi.org/10.3732/apps.1700023 Text en © 2017 Tosso et al. Published by the Botanical Society of America https://creativecommons.org/licenses/by-nc-sa/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (CC-BY-NC-SA 4.0 (https://creativecommons.org/licenses/by-nc-sa/4.0/) ), which permits unrestricted noncommercial use and redistribution provided that the original author and source are credited and the new work is distributed under the same license as the original. |
spellingShingle | Primer Note Tosso, Félicien Doucet, Jean-Louis Migliore, Jérémy Daïnou, Kasso Kaymak, Esra Kameni, Franck S. Monthe Hardy, Olivier J. Characterization of microsatellite markers in the African tropical tree species Guibourtia ehie (Fabaceae, Detarioideae)(1) |
title | Characterization of microsatellite markers in the African tropical tree species Guibourtia ehie (Fabaceae, Detarioideae)(1) |
title_full | Characterization of microsatellite markers in the African tropical tree species Guibourtia ehie (Fabaceae, Detarioideae)(1) |
title_fullStr | Characterization of microsatellite markers in the African tropical tree species Guibourtia ehie (Fabaceae, Detarioideae)(1) |
title_full_unstemmed | Characterization of microsatellite markers in the African tropical tree species Guibourtia ehie (Fabaceae, Detarioideae)(1) |
title_short | Characterization of microsatellite markers in the African tropical tree species Guibourtia ehie (Fabaceae, Detarioideae)(1) |
title_sort | characterization of microsatellite markers in the african tropical tree species guibourtia ehie (fabaceae, detarioideae)(1) |
topic | Primer Note |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5546166/ https://www.ncbi.nlm.nih.gov/pubmed/28791206 http://dx.doi.org/10.3732/apps.1700023 |
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