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Development of microsatellite markers for Eurya acuminatissima (Theaceae)(1)

PREMISE OF THE STUDY: Sixteen microsatellite markers were developed to study the fine-scale spatial genetic structure of Eurya acuminatissima, a dioecious tree species of Theaceae endemic to southern China. METHODS AND RESULTS: A total of 30 primer pairs were initially designed and tested on the bas...

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Autores principales: Shi, Xianggang, Wu, Haidan, Xie, Hongxian, Zheng, Yi, Huang, Yelin, Yu, Shixiao
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Botanical Society of America 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5546169/
https://www.ncbi.nlm.nih.gov/pubmed/28791209
http://dx.doi.org/10.3732/apps.1700037
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author Shi, Xianggang
Wu, Haidan
Xie, Hongxian
Zheng, Yi
Huang, Yelin
Yu, Shixiao
author_facet Shi, Xianggang
Wu, Haidan
Xie, Hongxian
Zheng, Yi
Huang, Yelin
Yu, Shixiao
author_sort Shi, Xianggang
collection PubMed
description PREMISE OF THE STUDY: Sixteen microsatellite markers were developed to study the fine-scale spatial genetic structure of Eurya acuminatissima, a dioecious tree species of Theaceae endemic to southern China. METHODS AND RESULTS: A total of 30 primer pairs were initially designed and tested on the basis of the transcriptome data of E. acuminatissima, of which 16 were successfully amplified and showed clear polymorphism. For these microsatellites, one to 17 alleles per locus were identified. The observed and expected heterozygosities ranged from 0 to 1.000 and 0 to 0.903, respectively. CONCLUSIONS: The microsatellite markers described here can be used to study genetic diversity and spatial genetic structure of E. acuminatissima. Furthermore, all loci were successfully cross-amplified in a related species, E. auriformis.
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spelling pubmed-55461692017-08-08 Development of microsatellite markers for Eurya acuminatissima (Theaceae)(1) Shi, Xianggang Wu, Haidan Xie, Hongxian Zheng, Yi Huang, Yelin Yu, Shixiao Appl Plant Sci Primer Note PREMISE OF THE STUDY: Sixteen microsatellite markers were developed to study the fine-scale spatial genetic structure of Eurya acuminatissima, a dioecious tree species of Theaceae endemic to southern China. METHODS AND RESULTS: A total of 30 primer pairs were initially designed and tested on the basis of the transcriptome data of E. acuminatissima, of which 16 were successfully amplified and showed clear polymorphism. For these microsatellites, one to 17 alleles per locus were identified. The observed and expected heterozygosities ranged from 0 to 1.000 and 0 to 0.903, respectively. CONCLUSIONS: The microsatellite markers described here can be used to study genetic diversity and spatial genetic structure of E. acuminatissima. Furthermore, all loci were successfully cross-amplified in a related species, E. auriformis. Botanical Society of America 2017-07-21 /pmc/articles/PMC5546169/ /pubmed/28791209 http://dx.doi.org/10.3732/apps.1700037 Text en © 2017 Shi et al. Published by the Botanical Society of America https://creativecommons.org/licenses/by-nc-sa/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (CC-BY-NC-SA 4.0 (https://creativecommons.org/licenses/by-nc-sa/4.0/) ), which permits unrestricted noncommercial use and redistribution provided that the original author and source are credited and the new work is distributed under the same license as the original.
spellingShingle Primer Note
Shi, Xianggang
Wu, Haidan
Xie, Hongxian
Zheng, Yi
Huang, Yelin
Yu, Shixiao
Development of microsatellite markers for Eurya acuminatissima (Theaceae)(1)
title Development of microsatellite markers for Eurya acuminatissima (Theaceae)(1)
title_full Development of microsatellite markers for Eurya acuminatissima (Theaceae)(1)
title_fullStr Development of microsatellite markers for Eurya acuminatissima (Theaceae)(1)
title_full_unstemmed Development of microsatellite markers for Eurya acuminatissima (Theaceae)(1)
title_short Development of microsatellite markers for Eurya acuminatissima (Theaceae)(1)
title_sort development of microsatellite markers for eurya acuminatissima (theaceae)(1)
topic Primer Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5546169/
https://www.ncbi.nlm.nih.gov/pubmed/28791209
http://dx.doi.org/10.3732/apps.1700037
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