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Development of microsatellite markers for Eurya acuminatissima (Theaceae)(1)
PREMISE OF THE STUDY: Sixteen microsatellite markers were developed to study the fine-scale spatial genetic structure of Eurya acuminatissima, a dioecious tree species of Theaceae endemic to southern China. METHODS AND RESULTS: A total of 30 primer pairs were initially designed and tested on the bas...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Botanical Society of America
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5546169/ https://www.ncbi.nlm.nih.gov/pubmed/28791209 http://dx.doi.org/10.3732/apps.1700037 |
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author | Shi, Xianggang Wu, Haidan Xie, Hongxian Zheng, Yi Huang, Yelin Yu, Shixiao |
author_facet | Shi, Xianggang Wu, Haidan Xie, Hongxian Zheng, Yi Huang, Yelin Yu, Shixiao |
author_sort | Shi, Xianggang |
collection | PubMed |
description | PREMISE OF THE STUDY: Sixteen microsatellite markers were developed to study the fine-scale spatial genetic structure of Eurya acuminatissima, a dioecious tree species of Theaceae endemic to southern China. METHODS AND RESULTS: A total of 30 primer pairs were initially designed and tested on the basis of the transcriptome data of E. acuminatissima, of which 16 were successfully amplified and showed clear polymorphism. For these microsatellites, one to 17 alleles per locus were identified. The observed and expected heterozygosities ranged from 0 to 1.000 and 0 to 0.903, respectively. CONCLUSIONS: The microsatellite markers described here can be used to study genetic diversity and spatial genetic structure of E. acuminatissima. Furthermore, all loci were successfully cross-amplified in a related species, E. auriformis. |
format | Online Article Text |
id | pubmed-5546169 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Botanical Society of America |
record_format | MEDLINE/PubMed |
spelling | pubmed-55461692017-08-08 Development of microsatellite markers for Eurya acuminatissima (Theaceae)(1) Shi, Xianggang Wu, Haidan Xie, Hongxian Zheng, Yi Huang, Yelin Yu, Shixiao Appl Plant Sci Primer Note PREMISE OF THE STUDY: Sixteen microsatellite markers were developed to study the fine-scale spatial genetic structure of Eurya acuminatissima, a dioecious tree species of Theaceae endemic to southern China. METHODS AND RESULTS: A total of 30 primer pairs were initially designed and tested on the basis of the transcriptome data of E. acuminatissima, of which 16 were successfully amplified and showed clear polymorphism. For these microsatellites, one to 17 alleles per locus were identified. The observed and expected heterozygosities ranged from 0 to 1.000 and 0 to 0.903, respectively. CONCLUSIONS: The microsatellite markers described here can be used to study genetic diversity and spatial genetic structure of E. acuminatissima. Furthermore, all loci were successfully cross-amplified in a related species, E. auriformis. Botanical Society of America 2017-07-21 /pmc/articles/PMC5546169/ /pubmed/28791209 http://dx.doi.org/10.3732/apps.1700037 Text en © 2017 Shi et al. Published by the Botanical Society of America https://creativecommons.org/licenses/by-nc-sa/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (CC-BY-NC-SA 4.0 (https://creativecommons.org/licenses/by-nc-sa/4.0/) ), which permits unrestricted noncommercial use and redistribution provided that the original author and source are credited and the new work is distributed under the same license as the original. |
spellingShingle | Primer Note Shi, Xianggang Wu, Haidan Xie, Hongxian Zheng, Yi Huang, Yelin Yu, Shixiao Development of microsatellite markers for Eurya acuminatissima (Theaceae)(1) |
title | Development of microsatellite markers for Eurya acuminatissima (Theaceae)(1) |
title_full | Development of microsatellite markers for Eurya acuminatissima (Theaceae)(1) |
title_fullStr | Development of microsatellite markers for Eurya acuminatissima (Theaceae)(1) |
title_full_unstemmed | Development of microsatellite markers for Eurya acuminatissima (Theaceae)(1) |
title_short | Development of microsatellite markers for Eurya acuminatissima (Theaceae)(1) |
title_sort | development of microsatellite markers for eurya acuminatissima (theaceae)(1) |
topic | Primer Note |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5546169/ https://www.ncbi.nlm.nih.gov/pubmed/28791209 http://dx.doi.org/10.3732/apps.1700037 |
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