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Spectrum construction of differentially expressed circular RNAs in patients with leukoaraiosis and function analysis of differentially expressed genes

Circular RNAs (circRNAs) are class of endogenous RNAs that have a role in the regulation of gene expression. The present study aimed to investigate the diagnostic value and role of circRNA in the pathogenesis of leukoaraiosis (LA). The present study performed Arraystar Human circRNA Array analysis o...

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Autores principales: Mi, Te, Luo, Changjiang, Hu, Yawei, Qu, Chuanqiang, Wang, Xiang, Guo, Shougang, Du, Yifeng
Formato: Online Artículo Texto
Lenguaje:English
Publicado: D.A. Spandidos 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5548020/
https://www.ncbi.nlm.nih.gov/pubmed/28677780
http://dx.doi.org/10.3892/mmr.2017.6871
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author Mi, Te
Luo, Changjiang
Hu, Yawei
Qu, Chuanqiang
Wang, Xiang
Guo, Shougang
Du, Yifeng
author_facet Mi, Te
Luo, Changjiang
Hu, Yawei
Qu, Chuanqiang
Wang, Xiang
Guo, Shougang
Du, Yifeng
author_sort Mi, Te
collection PubMed
description Circular RNAs (circRNAs) are class of endogenous RNAs that have a role in the regulation of gene expression. The present study aimed to investigate the diagnostic value and role of circRNA in the pathogenesis of leukoaraiosis (LA). The present study performed Arraystar Human circRNA Array analysis of 6 samples from LA cases and 6 samples from control cases. Differentially expressed (DE) circRNAs between two samples were identified through fold-change (>1.5-fold) screening. Afterwards, based on DE circRNAs, the gene ontology (GO) analysis of upregulated DE genes identified from DE circRNAs demonstrated that DE genes were primarily associated with cellular metabolic processes, membrane-bound organelles and binding. However, none were enriched in the Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway. Downregulated DE genes were enriched in cellular localization, cytoplasm and kinase binding. For the KEGG pathways, the downregulated DE genes were primarily associated with the insulin signaling pathway. The results of the present study indicated that the DE genes from differently expressed circRNAs may have an important role in the pathogenesis of LA and may be a novel targfet for further research.
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spelling pubmed-55480202017-10-24 Spectrum construction of differentially expressed circular RNAs in patients with leukoaraiosis and function analysis of differentially expressed genes Mi, Te Luo, Changjiang Hu, Yawei Qu, Chuanqiang Wang, Xiang Guo, Shougang Du, Yifeng Mol Med Rep Articles Circular RNAs (circRNAs) are class of endogenous RNAs that have a role in the regulation of gene expression. The present study aimed to investigate the diagnostic value and role of circRNA in the pathogenesis of leukoaraiosis (LA). The present study performed Arraystar Human circRNA Array analysis of 6 samples from LA cases and 6 samples from control cases. Differentially expressed (DE) circRNAs between two samples were identified through fold-change (>1.5-fold) screening. Afterwards, based on DE circRNAs, the gene ontology (GO) analysis of upregulated DE genes identified from DE circRNAs demonstrated that DE genes were primarily associated with cellular metabolic processes, membrane-bound organelles and binding. However, none were enriched in the Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway. Downregulated DE genes were enriched in cellular localization, cytoplasm and kinase binding. For the KEGG pathways, the downregulated DE genes were primarily associated with the insulin signaling pathway. The results of the present study indicated that the DE genes from differently expressed circRNAs may have an important role in the pathogenesis of LA and may be a novel targfet for further research. D.A. Spandidos 2017-09 2017-06-28 /pmc/articles/PMC5548020/ /pubmed/28677780 http://dx.doi.org/10.3892/mmr.2017.6871 Text en Copyright: © Mi et al. This is an open access article distributed under the terms of the Creative Commons Attribution-NonCommercial-NoDerivs License (https://creativecommons.org/licenses/by-nc-nd/4.0/) , which permits use and distribution in any medium, provided the original work is properly cited, the use is non-commercial and no modifications or adaptations are made.
spellingShingle Articles
Mi, Te
Luo, Changjiang
Hu, Yawei
Qu, Chuanqiang
Wang, Xiang
Guo, Shougang
Du, Yifeng
Spectrum construction of differentially expressed circular RNAs in patients with leukoaraiosis and function analysis of differentially expressed genes
title Spectrum construction of differentially expressed circular RNAs in patients with leukoaraiosis and function analysis of differentially expressed genes
title_full Spectrum construction of differentially expressed circular RNAs in patients with leukoaraiosis and function analysis of differentially expressed genes
title_fullStr Spectrum construction of differentially expressed circular RNAs in patients with leukoaraiosis and function analysis of differentially expressed genes
title_full_unstemmed Spectrum construction of differentially expressed circular RNAs in patients with leukoaraiosis and function analysis of differentially expressed genes
title_short Spectrum construction of differentially expressed circular RNAs in patients with leukoaraiosis and function analysis of differentially expressed genes
title_sort spectrum construction of differentially expressed circular rnas in patients with leukoaraiosis and function analysis of differentially expressed genes
topic Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5548020/
https://www.ncbi.nlm.nih.gov/pubmed/28677780
http://dx.doi.org/10.3892/mmr.2017.6871
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