Cargando…

Multi-fractal characterization of bacterial swimming dynamics: a case study on real and simulated Serratia marcescens

To add to the current state of knowledge about bacterial swimming dynamics, in this paper, we study the fractal swimming dynamics of populations of Serratia marcescens bacteria both in vitro and in silico, while accounting for realistic conditions like volume exclusion, chemical interactions, obstac...

Descripción completa

Detalles Bibliográficos
Autores principales: Koorehdavoudi, Hana, Bogdan, Paul, Wei, Guopeng, Marculescu, Radu, Zhuang, Jiang, Carlsen, Rika Wright, Sitti, Metin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: The Royal Society Publishing 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5549567/
https://www.ncbi.nlm.nih.gov/pubmed/28804259
http://dx.doi.org/10.1098/rspa.2017.0154
_version_ 1783256002764734464
author Koorehdavoudi, Hana
Bogdan, Paul
Wei, Guopeng
Marculescu, Radu
Zhuang, Jiang
Carlsen, Rika Wright
Sitti, Metin
author_facet Koorehdavoudi, Hana
Bogdan, Paul
Wei, Guopeng
Marculescu, Radu
Zhuang, Jiang
Carlsen, Rika Wright
Sitti, Metin
author_sort Koorehdavoudi, Hana
collection PubMed
description To add to the current state of knowledge about bacterial swimming dynamics, in this paper, we study the fractal swimming dynamics of populations of Serratia marcescens bacteria both in vitro and in silico, while accounting for realistic conditions like volume exclusion, chemical interactions, obstacles and distribution of chemoattractant in the environment. While previous research has shown that bacterial motion is non-ergodic, we demonstrate that, besides the non-ergodicity, the bacterial swimming dynamics is multi-fractal in nature. Finally, we demonstrate that the multi-fractal characteristic of bacterial dynamics is strongly affected by bacterial density and chemoattractant concentration.
format Online
Article
Text
id pubmed-5549567
institution National Center for Biotechnology Information
language English
publishDate 2017
publisher The Royal Society Publishing
record_format MEDLINE/PubMed
spelling pubmed-55495672017-08-11 Multi-fractal characterization of bacterial swimming dynamics: a case study on real and simulated Serratia marcescens Koorehdavoudi, Hana Bogdan, Paul Wei, Guopeng Marculescu, Radu Zhuang, Jiang Carlsen, Rika Wright Sitti, Metin Proc Math Phys Eng Sci Research Articles To add to the current state of knowledge about bacterial swimming dynamics, in this paper, we study the fractal swimming dynamics of populations of Serratia marcescens bacteria both in vitro and in silico, while accounting for realistic conditions like volume exclusion, chemical interactions, obstacles and distribution of chemoattractant in the environment. While previous research has shown that bacterial motion is non-ergodic, we demonstrate that, besides the non-ergodicity, the bacterial swimming dynamics is multi-fractal in nature. Finally, we demonstrate that the multi-fractal characteristic of bacterial dynamics is strongly affected by bacterial density and chemoattractant concentration. The Royal Society Publishing 2017-07 2017-07-12 /pmc/articles/PMC5549567/ /pubmed/28804259 http://dx.doi.org/10.1098/rspa.2017.0154 Text en © 2017 The Authors. http://creativecommons.org/licenses/by/4.0/ Published by the Royal Society under the terms of the Creative Commons Attribution License http://creativecommons.org/licenses/by/4.0/, which permits unrestricted use, provided the original author and source are credited.
spellingShingle Research Articles
Koorehdavoudi, Hana
Bogdan, Paul
Wei, Guopeng
Marculescu, Radu
Zhuang, Jiang
Carlsen, Rika Wright
Sitti, Metin
Multi-fractal characterization of bacterial swimming dynamics: a case study on real and simulated Serratia marcescens
title Multi-fractal characterization of bacterial swimming dynamics: a case study on real and simulated Serratia marcescens
title_full Multi-fractal characterization of bacterial swimming dynamics: a case study on real and simulated Serratia marcescens
title_fullStr Multi-fractal characterization of bacterial swimming dynamics: a case study on real and simulated Serratia marcescens
title_full_unstemmed Multi-fractal characterization of bacterial swimming dynamics: a case study on real and simulated Serratia marcescens
title_short Multi-fractal characterization of bacterial swimming dynamics: a case study on real and simulated Serratia marcescens
title_sort multi-fractal characterization of bacterial swimming dynamics: a case study on real and simulated serratia marcescens
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5549567/
https://www.ncbi.nlm.nih.gov/pubmed/28804259
http://dx.doi.org/10.1098/rspa.2017.0154
work_keys_str_mv AT koorehdavoudihana multifractalcharacterizationofbacterialswimmingdynamicsacasestudyonrealandsimulatedserratiamarcescens
AT bogdanpaul multifractalcharacterizationofbacterialswimmingdynamicsacasestudyonrealandsimulatedserratiamarcescens
AT weiguopeng multifractalcharacterizationofbacterialswimmingdynamicsacasestudyonrealandsimulatedserratiamarcescens
AT marculescuradu multifractalcharacterizationofbacterialswimmingdynamicsacasestudyonrealandsimulatedserratiamarcescens
AT zhuangjiang multifractalcharacterizationofbacterialswimmingdynamicsacasestudyonrealandsimulatedserratiamarcescens
AT carlsenrikawright multifractalcharacterizationofbacterialswimmingdynamicsacasestudyonrealandsimulatedserratiamarcescens
AT sittimetin multifractalcharacterizationofbacterialswimmingdynamicsacasestudyonrealandsimulatedserratiamarcescens