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Hugonella massiliensis gen. nov., sp. nov., genome sequence, and description of a new strictly anaerobic bacterium isolated from the human gut

The human gut is composed of a large diversity of microorganisms, which have been poorly described. Here, using culturomics, a new concept based on the variation in culture conditions and MALDI‐TOF MS identification, we proceed to explore the microbial diversity of the complex ecosystem of the human...

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Autores principales: Elsawi, Ziena, Togo, Amadou Hamidou, Beye, Mamadou, Dubourg, Grégory, Andrieu, Claudia, Armsrtong, Nicholas, Richez, Magali, di Pinto, Fabrizio, Bittar, Fadi, Labas, Noémie, Fournier, Pierre‐Edouard, Raoult, Didier, Khelaifia, Saber
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5552949/
https://www.ncbi.nlm.nih.gov/pubmed/28326685
http://dx.doi.org/10.1002/mbo3.458
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author Elsawi, Ziena
Togo, Amadou Hamidou
Beye, Mamadou
Dubourg, Grégory
Andrieu, Claudia
Armsrtong, Nicholas
Richez, Magali
di Pinto, Fabrizio
Bittar, Fadi
Labas, Noémie
Fournier, Pierre‐Edouard
Raoult, Didier
Khelaifia, Saber
author_facet Elsawi, Ziena
Togo, Amadou Hamidou
Beye, Mamadou
Dubourg, Grégory
Andrieu, Claudia
Armsrtong, Nicholas
Richez, Magali
di Pinto, Fabrizio
Bittar, Fadi
Labas, Noémie
Fournier, Pierre‐Edouard
Raoult, Didier
Khelaifia, Saber
author_sort Elsawi, Ziena
collection PubMed
description The human gut is composed of a large diversity of microorganisms, which have been poorly described. Here, using culturomics, a new concept based on the variation in culture conditions and MALDI‐TOF MS identification, we proceed to explore the microbial diversity of the complex ecosystem of the human gut. Using this approach, we isolated strain AT8(T) (=CSUR P2118 =  DSM 101782) from stool specimens collected from a 51‐year‐old obese French woman. Strain AT8(T) is a strictly anaerobic, nonmotile, nonspore‐forming gram‐positive coccus that do not exhibit catalase and oxidase activities. 16S rDNA‐based identification of strain AT8(T) demonstrated 92% gene sequence similarity with Eggerthella lenta DSM 2243, the phylogenetically closed validly named type species. Here, we present a set of features for the strain AT8(T) and the description of its complete genome sequence and annotation. The 2,091,845 bp long genome has a G+C content of 63.46% and encodes1,849 predicted genes; 1,781 were protein‐coding genes, and 68 were RNAs. On the basis of the characteristics reported here, we propose the creation of a new bacterial genus Hugonella gen. nov., belonging to the Eggerthellaceae family and including Hugonella massiliensis gen. nov., sp. nov., strain AT8(T) as the type strain.
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spelling pubmed-55529492017-08-15 Hugonella massiliensis gen. nov., sp. nov., genome sequence, and description of a new strictly anaerobic bacterium isolated from the human gut Elsawi, Ziena Togo, Amadou Hamidou Beye, Mamadou Dubourg, Grégory Andrieu, Claudia Armsrtong, Nicholas Richez, Magali di Pinto, Fabrizio Bittar, Fadi Labas, Noémie Fournier, Pierre‐Edouard Raoult, Didier Khelaifia, Saber Microbiologyopen Original Research The human gut is composed of a large diversity of microorganisms, which have been poorly described. Here, using culturomics, a new concept based on the variation in culture conditions and MALDI‐TOF MS identification, we proceed to explore the microbial diversity of the complex ecosystem of the human gut. Using this approach, we isolated strain AT8(T) (=CSUR P2118 =  DSM 101782) from stool specimens collected from a 51‐year‐old obese French woman. Strain AT8(T) is a strictly anaerobic, nonmotile, nonspore‐forming gram‐positive coccus that do not exhibit catalase and oxidase activities. 16S rDNA‐based identification of strain AT8(T) demonstrated 92% gene sequence similarity with Eggerthella lenta DSM 2243, the phylogenetically closed validly named type species. Here, we present a set of features for the strain AT8(T) and the description of its complete genome sequence and annotation. The 2,091,845 bp long genome has a G+C content of 63.46% and encodes1,849 predicted genes; 1,781 were protein‐coding genes, and 68 were RNAs. On the basis of the characteristics reported here, we propose the creation of a new bacterial genus Hugonella gen. nov., belonging to the Eggerthellaceae family and including Hugonella massiliensis gen. nov., sp. nov., strain AT8(T) as the type strain. John Wiley and Sons Inc. 2017-03-21 /pmc/articles/PMC5552949/ /pubmed/28326685 http://dx.doi.org/10.1002/mbo3.458 Text en © 2017 The Authors. MicrobiologyOpen published by John Wiley & Sons Ltd. This is an open access article under the terms of the Creative Commons Attribution (http://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Research
Elsawi, Ziena
Togo, Amadou Hamidou
Beye, Mamadou
Dubourg, Grégory
Andrieu, Claudia
Armsrtong, Nicholas
Richez, Magali
di Pinto, Fabrizio
Bittar, Fadi
Labas, Noémie
Fournier, Pierre‐Edouard
Raoult, Didier
Khelaifia, Saber
Hugonella massiliensis gen. nov., sp. nov., genome sequence, and description of a new strictly anaerobic bacterium isolated from the human gut
title Hugonella massiliensis gen. nov., sp. nov., genome sequence, and description of a new strictly anaerobic bacterium isolated from the human gut
title_full Hugonella massiliensis gen. nov., sp. nov., genome sequence, and description of a new strictly anaerobic bacterium isolated from the human gut
title_fullStr Hugonella massiliensis gen. nov., sp. nov., genome sequence, and description of a new strictly anaerobic bacterium isolated from the human gut
title_full_unstemmed Hugonella massiliensis gen. nov., sp. nov., genome sequence, and description of a new strictly anaerobic bacterium isolated from the human gut
title_short Hugonella massiliensis gen. nov., sp. nov., genome sequence, and description of a new strictly anaerobic bacterium isolated from the human gut
title_sort hugonella massiliensis gen. nov., sp. nov., genome sequence, and description of a new strictly anaerobic bacterium isolated from the human gut
topic Original Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5552949/
https://www.ncbi.nlm.nih.gov/pubmed/28326685
http://dx.doi.org/10.1002/mbo3.458
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