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Hugonella massiliensis gen. nov., sp. nov., genome sequence, and description of a new strictly anaerobic bacterium isolated from the human gut
The human gut is composed of a large diversity of microorganisms, which have been poorly described. Here, using culturomics, a new concept based on the variation in culture conditions and MALDI‐TOF MS identification, we proceed to explore the microbial diversity of the complex ecosystem of the human...
Autores principales: | , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5552949/ https://www.ncbi.nlm.nih.gov/pubmed/28326685 http://dx.doi.org/10.1002/mbo3.458 |
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author | Elsawi, Ziena Togo, Amadou Hamidou Beye, Mamadou Dubourg, Grégory Andrieu, Claudia Armsrtong, Nicholas Richez, Magali di Pinto, Fabrizio Bittar, Fadi Labas, Noémie Fournier, Pierre‐Edouard Raoult, Didier Khelaifia, Saber |
author_facet | Elsawi, Ziena Togo, Amadou Hamidou Beye, Mamadou Dubourg, Grégory Andrieu, Claudia Armsrtong, Nicholas Richez, Magali di Pinto, Fabrizio Bittar, Fadi Labas, Noémie Fournier, Pierre‐Edouard Raoult, Didier Khelaifia, Saber |
author_sort | Elsawi, Ziena |
collection | PubMed |
description | The human gut is composed of a large diversity of microorganisms, which have been poorly described. Here, using culturomics, a new concept based on the variation in culture conditions and MALDI‐TOF MS identification, we proceed to explore the microbial diversity of the complex ecosystem of the human gut. Using this approach, we isolated strain AT8(T) (=CSUR P2118 = DSM 101782) from stool specimens collected from a 51‐year‐old obese French woman. Strain AT8(T) is a strictly anaerobic, nonmotile, nonspore‐forming gram‐positive coccus that do not exhibit catalase and oxidase activities. 16S rDNA‐based identification of strain AT8(T) demonstrated 92% gene sequence similarity with Eggerthella lenta DSM 2243, the phylogenetically closed validly named type species. Here, we present a set of features for the strain AT8(T) and the description of its complete genome sequence and annotation. The 2,091,845 bp long genome has a G+C content of 63.46% and encodes1,849 predicted genes; 1,781 were protein‐coding genes, and 68 were RNAs. On the basis of the characteristics reported here, we propose the creation of a new bacterial genus Hugonella gen. nov., belonging to the Eggerthellaceae family and including Hugonella massiliensis gen. nov., sp. nov., strain AT8(T) as the type strain. |
format | Online Article Text |
id | pubmed-5552949 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-55529492017-08-15 Hugonella massiliensis gen. nov., sp. nov., genome sequence, and description of a new strictly anaerobic bacterium isolated from the human gut Elsawi, Ziena Togo, Amadou Hamidou Beye, Mamadou Dubourg, Grégory Andrieu, Claudia Armsrtong, Nicholas Richez, Magali di Pinto, Fabrizio Bittar, Fadi Labas, Noémie Fournier, Pierre‐Edouard Raoult, Didier Khelaifia, Saber Microbiologyopen Original Research The human gut is composed of a large diversity of microorganisms, which have been poorly described. Here, using culturomics, a new concept based on the variation in culture conditions and MALDI‐TOF MS identification, we proceed to explore the microbial diversity of the complex ecosystem of the human gut. Using this approach, we isolated strain AT8(T) (=CSUR P2118 = DSM 101782) from stool specimens collected from a 51‐year‐old obese French woman. Strain AT8(T) is a strictly anaerobic, nonmotile, nonspore‐forming gram‐positive coccus that do not exhibit catalase and oxidase activities. 16S rDNA‐based identification of strain AT8(T) demonstrated 92% gene sequence similarity with Eggerthella lenta DSM 2243, the phylogenetically closed validly named type species. Here, we present a set of features for the strain AT8(T) and the description of its complete genome sequence and annotation. The 2,091,845 bp long genome has a G+C content of 63.46% and encodes1,849 predicted genes; 1,781 were protein‐coding genes, and 68 were RNAs. On the basis of the characteristics reported here, we propose the creation of a new bacterial genus Hugonella gen. nov., belonging to the Eggerthellaceae family and including Hugonella massiliensis gen. nov., sp. nov., strain AT8(T) as the type strain. John Wiley and Sons Inc. 2017-03-21 /pmc/articles/PMC5552949/ /pubmed/28326685 http://dx.doi.org/10.1002/mbo3.458 Text en © 2017 The Authors. MicrobiologyOpen published by John Wiley & Sons Ltd. This is an open access article under the terms of the Creative Commons Attribution (http://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Original Research Elsawi, Ziena Togo, Amadou Hamidou Beye, Mamadou Dubourg, Grégory Andrieu, Claudia Armsrtong, Nicholas Richez, Magali di Pinto, Fabrizio Bittar, Fadi Labas, Noémie Fournier, Pierre‐Edouard Raoult, Didier Khelaifia, Saber Hugonella massiliensis gen. nov., sp. nov., genome sequence, and description of a new strictly anaerobic bacterium isolated from the human gut |
title |
Hugonella massiliensis gen. nov., sp. nov., genome sequence, and description of a new strictly anaerobic bacterium isolated from the human gut |
title_full |
Hugonella massiliensis gen. nov., sp. nov., genome sequence, and description of a new strictly anaerobic bacterium isolated from the human gut |
title_fullStr |
Hugonella massiliensis gen. nov., sp. nov., genome sequence, and description of a new strictly anaerobic bacterium isolated from the human gut |
title_full_unstemmed |
Hugonella massiliensis gen. nov., sp. nov., genome sequence, and description of a new strictly anaerobic bacterium isolated from the human gut |
title_short |
Hugonella massiliensis gen. nov., sp. nov., genome sequence, and description of a new strictly anaerobic bacterium isolated from the human gut |
title_sort | hugonella massiliensis gen. nov., sp. nov., genome sequence, and description of a new strictly anaerobic bacterium isolated from the human gut |
topic | Original Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5552949/ https://www.ncbi.nlm.nih.gov/pubmed/28326685 http://dx.doi.org/10.1002/mbo3.458 |
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