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Development and characterization of microsatellite markers for diploid populations of the wind-pollinated herb Mercurialis annua

OBJECTIVE: Mercurialis annua is a wind-pollinated annual plant that has long been used as a model for the study of ploidy and sexual-systems evolution. However, no molecular markers are yet available for genetic studies of its diploid populations. Here, we develop and characterize a set of eight pol...

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Autores principales: Machado, Ana Paula, Pannell, John R., Tonnabel, Jeanne
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5553799/
https://www.ncbi.nlm.nih.gov/pubmed/28797302
http://dx.doi.org/10.1186/s13104-017-2700-z
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author Machado, Ana Paula
Pannell, John R.
Tonnabel, Jeanne
author_facet Machado, Ana Paula
Pannell, John R.
Tonnabel, Jeanne
author_sort Machado, Ana Paula
collection PubMed
description OBJECTIVE: Mercurialis annua is a wind-pollinated annual plant that has long been used as a model for the study of ploidy and sexual-systems evolution. However, no molecular markers are yet available for genetic studies of its diploid populations. Here, we develop and characterize a set of eight polymorphic microsatellite markers for diploid dioecious M. annua. RESULTS: Following an SSR-enrichment protocol, 13 microsatellite markers were proposed, eight of which yielded successful amplification and polymorphism. We screened the eight microsatellite loci in 100 individuals. The number of alleles per marker ranged from 6 to 12, and observed heterozygosity ranged from 0.57 to 0.76. To estimate potential allele scoring errors, these individuals’ offspring were genotyped for the same loci, and error rates were estimated from parentage analyses. Error rates ranged from 0 to 6.8%. Cross-amplification tests were performed for congeneric M. huetti and M. canariensis, with successful amplification for seven and six of the eight loci, respectively. The novel microsatellite markers proposed here will be crucial for a multitude of genetic studies of M. annua and further establish its importance as a model species for addressing ecological and population genetic questions.
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spelling pubmed-55537992017-08-15 Development and characterization of microsatellite markers for diploid populations of the wind-pollinated herb Mercurialis annua Machado, Ana Paula Pannell, John R. Tonnabel, Jeanne BMC Res Notes Research Note OBJECTIVE: Mercurialis annua is a wind-pollinated annual plant that has long been used as a model for the study of ploidy and sexual-systems evolution. However, no molecular markers are yet available for genetic studies of its diploid populations. Here, we develop and characterize a set of eight polymorphic microsatellite markers for diploid dioecious M. annua. RESULTS: Following an SSR-enrichment protocol, 13 microsatellite markers were proposed, eight of which yielded successful amplification and polymorphism. We screened the eight microsatellite loci in 100 individuals. The number of alleles per marker ranged from 6 to 12, and observed heterozygosity ranged from 0.57 to 0.76. To estimate potential allele scoring errors, these individuals’ offspring were genotyped for the same loci, and error rates were estimated from parentage analyses. Error rates ranged from 0 to 6.8%. Cross-amplification tests were performed for congeneric M. huetti and M. canariensis, with successful amplification for seven and six of the eight loci, respectively. The novel microsatellite markers proposed here will be crucial for a multitude of genetic studies of M. annua and further establish its importance as a model species for addressing ecological and population genetic questions. BioMed Central 2017-08-10 /pmc/articles/PMC5553799/ /pubmed/28797302 http://dx.doi.org/10.1186/s13104-017-2700-z Text en © The Author(s) 2017 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Research Note
Machado, Ana Paula
Pannell, John R.
Tonnabel, Jeanne
Development and characterization of microsatellite markers for diploid populations of the wind-pollinated herb Mercurialis annua
title Development and characterization of microsatellite markers for diploid populations of the wind-pollinated herb Mercurialis annua
title_full Development and characterization of microsatellite markers for diploid populations of the wind-pollinated herb Mercurialis annua
title_fullStr Development and characterization of microsatellite markers for diploid populations of the wind-pollinated herb Mercurialis annua
title_full_unstemmed Development and characterization of microsatellite markers for diploid populations of the wind-pollinated herb Mercurialis annua
title_short Development and characterization of microsatellite markers for diploid populations of the wind-pollinated herb Mercurialis annua
title_sort development and characterization of microsatellite markers for diploid populations of the wind-pollinated herb mercurialis annua
topic Research Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5553799/
https://www.ncbi.nlm.nih.gov/pubmed/28797302
http://dx.doi.org/10.1186/s13104-017-2700-z
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