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Development and characterization of microsatellite markers for diploid populations of the wind-pollinated herb Mercurialis annua
OBJECTIVE: Mercurialis annua is a wind-pollinated annual plant that has long been used as a model for the study of ploidy and sexual-systems evolution. However, no molecular markers are yet available for genetic studies of its diploid populations. Here, we develop and characterize a set of eight pol...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5553799/ https://www.ncbi.nlm.nih.gov/pubmed/28797302 http://dx.doi.org/10.1186/s13104-017-2700-z |
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author | Machado, Ana Paula Pannell, John R. Tonnabel, Jeanne |
author_facet | Machado, Ana Paula Pannell, John R. Tonnabel, Jeanne |
author_sort | Machado, Ana Paula |
collection | PubMed |
description | OBJECTIVE: Mercurialis annua is a wind-pollinated annual plant that has long been used as a model for the study of ploidy and sexual-systems evolution. However, no molecular markers are yet available for genetic studies of its diploid populations. Here, we develop and characterize a set of eight polymorphic microsatellite markers for diploid dioecious M. annua. RESULTS: Following an SSR-enrichment protocol, 13 microsatellite markers were proposed, eight of which yielded successful amplification and polymorphism. We screened the eight microsatellite loci in 100 individuals. The number of alleles per marker ranged from 6 to 12, and observed heterozygosity ranged from 0.57 to 0.76. To estimate potential allele scoring errors, these individuals’ offspring were genotyped for the same loci, and error rates were estimated from parentage analyses. Error rates ranged from 0 to 6.8%. Cross-amplification tests were performed for congeneric M. huetti and M. canariensis, with successful amplification for seven and six of the eight loci, respectively. The novel microsatellite markers proposed here will be crucial for a multitude of genetic studies of M. annua and further establish its importance as a model species for addressing ecological and population genetic questions. |
format | Online Article Text |
id | pubmed-5553799 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-55537992017-08-15 Development and characterization of microsatellite markers for diploid populations of the wind-pollinated herb Mercurialis annua Machado, Ana Paula Pannell, John R. Tonnabel, Jeanne BMC Res Notes Research Note OBJECTIVE: Mercurialis annua is a wind-pollinated annual plant that has long been used as a model for the study of ploidy and sexual-systems evolution. However, no molecular markers are yet available for genetic studies of its diploid populations. Here, we develop and characterize a set of eight polymorphic microsatellite markers for diploid dioecious M. annua. RESULTS: Following an SSR-enrichment protocol, 13 microsatellite markers were proposed, eight of which yielded successful amplification and polymorphism. We screened the eight microsatellite loci in 100 individuals. The number of alleles per marker ranged from 6 to 12, and observed heterozygosity ranged from 0.57 to 0.76. To estimate potential allele scoring errors, these individuals’ offspring were genotyped for the same loci, and error rates were estimated from parentage analyses. Error rates ranged from 0 to 6.8%. Cross-amplification tests were performed for congeneric M. huetti and M. canariensis, with successful amplification for seven and six of the eight loci, respectively. The novel microsatellite markers proposed here will be crucial for a multitude of genetic studies of M. annua and further establish its importance as a model species for addressing ecological and population genetic questions. BioMed Central 2017-08-10 /pmc/articles/PMC5553799/ /pubmed/28797302 http://dx.doi.org/10.1186/s13104-017-2700-z Text en © The Author(s) 2017 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Research Note Machado, Ana Paula Pannell, John R. Tonnabel, Jeanne Development and characterization of microsatellite markers for diploid populations of the wind-pollinated herb Mercurialis annua |
title | Development and characterization of microsatellite markers for diploid populations of the wind-pollinated herb Mercurialis annua |
title_full | Development and characterization of microsatellite markers for diploid populations of the wind-pollinated herb Mercurialis annua |
title_fullStr | Development and characterization of microsatellite markers for diploid populations of the wind-pollinated herb Mercurialis annua |
title_full_unstemmed | Development and characterization of microsatellite markers for diploid populations of the wind-pollinated herb Mercurialis annua |
title_short | Development and characterization of microsatellite markers for diploid populations of the wind-pollinated herb Mercurialis annua |
title_sort | development and characterization of microsatellite markers for diploid populations of the wind-pollinated herb mercurialis annua |
topic | Research Note |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5553799/ https://www.ncbi.nlm.nih.gov/pubmed/28797302 http://dx.doi.org/10.1186/s13104-017-2700-z |
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