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Reconstruction of a Genome-scale Metabolic Network of Komagataeibacter nataicola RZS01 for Cellulose Production

Bacterial cellulose (BC) is widely used in industries owing to its high purity and strength. Although Komagataeibacter nataicola is a representative species for BC production, its intracellular metabolism leading to BC secretion is unclear. In the present study, a genome-scale metabolic network of c...

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Autores principales: Zhang, Heng, Ye, Chao, Xu, Nan, Chen, Chuntao, Chen, Xiao, Yuan, Fanshu, Xu, Yunhua, Yang, Jiazhi, Sun, Dongping
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5554229/
https://www.ncbi.nlm.nih.gov/pubmed/28801647
http://dx.doi.org/10.1038/s41598-017-06918-1
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author Zhang, Heng
Ye, Chao
Xu, Nan
Chen, Chuntao
Chen, Xiao
Yuan, Fanshu
Xu, Yunhua
Yang, Jiazhi
Sun, Dongping
author_facet Zhang, Heng
Ye, Chao
Xu, Nan
Chen, Chuntao
Chen, Xiao
Yuan, Fanshu
Xu, Yunhua
Yang, Jiazhi
Sun, Dongping
author_sort Zhang, Heng
collection PubMed
description Bacterial cellulose (BC) is widely used in industries owing to its high purity and strength. Although Komagataeibacter nataicola is a representative species for BC production, its intracellular metabolism leading to BC secretion is unclear. In the present study, a genome-scale metabolic network of cellulose-producing K. nataicola strain RZS01 was reconstructed to understand its metabolic behavior. This model iHZ771 comprised 771 genes, 2035 metabolites, and 2014 reactions. Constraint-based analysis was used to characterize and evaluate the critical intracellular pathways. The analysis revealed that a total of 71 and 30 genes are necessary for cellular growth in a minimal medium and complex medium, respectively. Glycerol was identified as the optimal carbon source for the highest BC production. The minimization of metabolic adjustment algorithm identified 8 genes as potential targets for over-production of BC. Overall, model iHZ771 proved to be a useful platform for understanding the physiology and BC production of K. nataicola.
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spelling pubmed-55542292017-08-15 Reconstruction of a Genome-scale Metabolic Network of Komagataeibacter nataicola RZS01 for Cellulose Production Zhang, Heng Ye, Chao Xu, Nan Chen, Chuntao Chen, Xiao Yuan, Fanshu Xu, Yunhua Yang, Jiazhi Sun, Dongping Sci Rep Article Bacterial cellulose (BC) is widely used in industries owing to its high purity and strength. Although Komagataeibacter nataicola is a representative species for BC production, its intracellular metabolism leading to BC secretion is unclear. In the present study, a genome-scale metabolic network of cellulose-producing K. nataicola strain RZS01 was reconstructed to understand its metabolic behavior. This model iHZ771 comprised 771 genes, 2035 metabolites, and 2014 reactions. Constraint-based analysis was used to characterize and evaluate the critical intracellular pathways. The analysis revealed that a total of 71 and 30 genes are necessary for cellular growth in a minimal medium and complex medium, respectively. Glycerol was identified as the optimal carbon source for the highest BC production. The minimization of metabolic adjustment algorithm identified 8 genes as potential targets for over-production of BC. Overall, model iHZ771 proved to be a useful platform for understanding the physiology and BC production of K. nataicola. Nature Publishing Group UK 2017-08-11 /pmc/articles/PMC5554229/ /pubmed/28801647 http://dx.doi.org/10.1038/s41598-017-06918-1 Text en © The Author(s) 2017 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Zhang, Heng
Ye, Chao
Xu, Nan
Chen, Chuntao
Chen, Xiao
Yuan, Fanshu
Xu, Yunhua
Yang, Jiazhi
Sun, Dongping
Reconstruction of a Genome-scale Metabolic Network of Komagataeibacter nataicola RZS01 for Cellulose Production
title Reconstruction of a Genome-scale Metabolic Network of Komagataeibacter nataicola RZS01 for Cellulose Production
title_full Reconstruction of a Genome-scale Metabolic Network of Komagataeibacter nataicola RZS01 for Cellulose Production
title_fullStr Reconstruction of a Genome-scale Metabolic Network of Komagataeibacter nataicola RZS01 for Cellulose Production
title_full_unstemmed Reconstruction of a Genome-scale Metabolic Network of Komagataeibacter nataicola RZS01 for Cellulose Production
title_short Reconstruction of a Genome-scale Metabolic Network of Komagataeibacter nataicola RZS01 for Cellulose Production
title_sort reconstruction of a genome-scale metabolic network of komagataeibacter nataicola rzs01 for cellulose production
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5554229/
https://www.ncbi.nlm.nih.gov/pubmed/28801647
http://dx.doi.org/10.1038/s41598-017-06918-1
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