Cargando…
The draft genome of the hyperthermophilic archaeon Pyrodictium delaneyi strain hulk, an iron and nitrate reducer, reveals the capacity for sulfate reduction
Pyrodictium delaneyi strain Hulk is a newly sequenced strain isolated from chimney samples collected from the Hulk sulfide mound on the main Endeavour Segment of the Juan de Fuca Ridge (47.9501 latitude, −129.0970 longitude, depth 2200 m) in the Northeast Pacific Ocean. The draft genome of strain Hu...
Autores principales: | , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2017
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5556600/ https://www.ncbi.nlm.nih.gov/pubmed/28814988 http://dx.doi.org/10.1186/s40793-017-0260-4 |
_version_ | 1783257094256852992 |
---|---|
author | Demey, Lucas M. Miller, Caitlin R. Manzella, Michael P Spurbeck, Rachel R. Sandhu, Sukhinder K. Reguera, Gemma Kashefi, Kazem |
author_facet | Demey, Lucas M. Miller, Caitlin R. Manzella, Michael P Spurbeck, Rachel R. Sandhu, Sukhinder K. Reguera, Gemma Kashefi, Kazem |
author_sort | Demey, Lucas M. |
collection | PubMed |
description | Pyrodictium delaneyi strain Hulk is a newly sequenced strain isolated from chimney samples collected from the Hulk sulfide mound on the main Endeavour Segment of the Juan de Fuca Ridge (47.9501 latitude, −129.0970 longitude, depth 2200 m) in the Northeast Pacific Ocean. The draft genome of strain Hulk shared 99.77% similarity with the complete genome of the type strain Su06(T), which shares with strain Hulk the ability to reduce iron and nitrate for respiration. The annotation of the genome of strain Hulk identified genes for the reduction of several sulfur-containing electron acceptors, an unsuspected respiratory capability in this species that was experimentally confirmed for strain Hulk. This makes P. delaneyi strain Hulk the first hyperthermophilic archaeon known to gain energy for growth by reduction of iron, nitrate, and sulfur-containing electron acceptors. Here we present the most notable features of the genome of P. delaneyi strain Hulk and identify genes encoding proteins critical to its respiratory versatility at high temperatures. The description presented here corresponds to a draft genome sequence containing 2,042,801 bp in 9 contigs, 2019 protein-coding genes, 53 RNA genes, and 1365 hypothetical genes. |
format | Online Article Text |
id | pubmed-5556600 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-55566002017-08-16 The draft genome of the hyperthermophilic archaeon Pyrodictium delaneyi strain hulk, an iron and nitrate reducer, reveals the capacity for sulfate reduction Demey, Lucas M. Miller, Caitlin R. Manzella, Michael P Spurbeck, Rachel R. Sandhu, Sukhinder K. Reguera, Gemma Kashefi, Kazem Stand Genomic Sci Extended Genome Report Pyrodictium delaneyi strain Hulk is a newly sequenced strain isolated from chimney samples collected from the Hulk sulfide mound on the main Endeavour Segment of the Juan de Fuca Ridge (47.9501 latitude, −129.0970 longitude, depth 2200 m) in the Northeast Pacific Ocean. The draft genome of strain Hulk shared 99.77% similarity with the complete genome of the type strain Su06(T), which shares with strain Hulk the ability to reduce iron and nitrate for respiration. The annotation of the genome of strain Hulk identified genes for the reduction of several sulfur-containing electron acceptors, an unsuspected respiratory capability in this species that was experimentally confirmed for strain Hulk. This makes P. delaneyi strain Hulk the first hyperthermophilic archaeon known to gain energy for growth by reduction of iron, nitrate, and sulfur-containing electron acceptors. Here we present the most notable features of the genome of P. delaneyi strain Hulk and identify genes encoding proteins critical to its respiratory versatility at high temperatures. The description presented here corresponds to a draft genome sequence containing 2,042,801 bp in 9 contigs, 2019 protein-coding genes, 53 RNA genes, and 1365 hypothetical genes. BioMed Central 2017-08-15 /pmc/articles/PMC5556600/ /pubmed/28814988 http://dx.doi.org/10.1186/s40793-017-0260-4 Text en © The Author(s). 2017 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Extended Genome Report Demey, Lucas M. Miller, Caitlin R. Manzella, Michael P Spurbeck, Rachel R. Sandhu, Sukhinder K. Reguera, Gemma Kashefi, Kazem The draft genome of the hyperthermophilic archaeon Pyrodictium delaneyi strain hulk, an iron and nitrate reducer, reveals the capacity for sulfate reduction |
title | The draft genome of the hyperthermophilic archaeon Pyrodictium delaneyi strain hulk, an iron and nitrate reducer, reveals the capacity for sulfate reduction |
title_full | The draft genome of the hyperthermophilic archaeon Pyrodictium delaneyi strain hulk, an iron and nitrate reducer, reveals the capacity for sulfate reduction |
title_fullStr | The draft genome of the hyperthermophilic archaeon Pyrodictium delaneyi strain hulk, an iron and nitrate reducer, reveals the capacity for sulfate reduction |
title_full_unstemmed | The draft genome of the hyperthermophilic archaeon Pyrodictium delaneyi strain hulk, an iron and nitrate reducer, reveals the capacity for sulfate reduction |
title_short | The draft genome of the hyperthermophilic archaeon Pyrodictium delaneyi strain hulk, an iron and nitrate reducer, reveals the capacity for sulfate reduction |
title_sort | draft genome of the hyperthermophilic archaeon pyrodictium delaneyi strain hulk, an iron and nitrate reducer, reveals the capacity for sulfate reduction |
topic | Extended Genome Report |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5556600/ https://www.ncbi.nlm.nih.gov/pubmed/28814988 http://dx.doi.org/10.1186/s40793-017-0260-4 |
work_keys_str_mv | AT demeylucasm thedraftgenomeofthehyperthermophilicarchaeonpyrodictiumdelaneyistrainhulkanironandnitratereducerrevealsthecapacityforsulfatereduction AT millercaitlinr thedraftgenomeofthehyperthermophilicarchaeonpyrodictiumdelaneyistrainhulkanironandnitratereducerrevealsthecapacityforsulfatereduction AT manzellamichaelp thedraftgenomeofthehyperthermophilicarchaeonpyrodictiumdelaneyistrainhulkanironandnitratereducerrevealsthecapacityforsulfatereduction AT spurbeckrachelr thedraftgenomeofthehyperthermophilicarchaeonpyrodictiumdelaneyistrainhulkanironandnitratereducerrevealsthecapacityforsulfatereduction AT sandhusukhinderk thedraftgenomeofthehyperthermophilicarchaeonpyrodictiumdelaneyistrainhulkanironandnitratereducerrevealsthecapacityforsulfatereduction AT regueragemma thedraftgenomeofthehyperthermophilicarchaeonpyrodictiumdelaneyistrainhulkanironandnitratereducerrevealsthecapacityforsulfatereduction AT kashefikazem thedraftgenomeofthehyperthermophilicarchaeonpyrodictiumdelaneyistrainhulkanironandnitratereducerrevealsthecapacityforsulfatereduction AT demeylucasm draftgenomeofthehyperthermophilicarchaeonpyrodictiumdelaneyistrainhulkanironandnitratereducerrevealsthecapacityforsulfatereduction AT millercaitlinr draftgenomeofthehyperthermophilicarchaeonpyrodictiumdelaneyistrainhulkanironandnitratereducerrevealsthecapacityforsulfatereduction AT manzellamichaelp draftgenomeofthehyperthermophilicarchaeonpyrodictiumdelaneyistrainhulkanironandnitratereducerrevealsthecapacityforsulfatereduction AT spurbeckrachelr draftgenomeofthehyperthermophilicarchaeonpyrodictiumdelaneyistrainhulkanironandnitratereducerrevealsthecapacityforsulfatereduction AT sandhusukhinderk draftgenomeofthehyperthermophilicarchaeonpyrodictiumdelaneyistrainhulkanironandnitratereducerrevealsthecapacityforsulfatereduction AT regueragemma draftgenomeofthehyperthermophilicarchaeonpyrodictiumdelaneyistrainhulkanironandnitratereducerrevealsthecapacityforsulfatereduction AT kashefikazem draftgenomeofthehyperthermophilicarchaeonpyrodictiumdelaneyistrainhulkanironandnitratereducerrevealsthecapacityforsulfatereduction |