Cargando…
Genome re-sequencing reveals the history of apple and supports a two-stage model for fruit enlargement
Human selection has reshaped crop genomes. Here we report an apple genome variation map generated through genome sequencing of 117 diverse accessions. A comprehensive model of apple speciation and domestication along the Silk Road is proposed based on evidence from diverse genomic analyses. Cultivat...
| Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
|---|---|
| Formato: | Online Artículo Texto |
| Lenguaje: | English |
| Publicado: |
Nature Publishing Group UK
2017
|
| Materias: | |
| Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5557836/ https://www.ncbi.nlm.nih.gov/pubmed/28811498 http://dx.doi.org/10.1038/s41467-017-00336-7 |
| _version_ | 1783257278687739904 |
|---|---|
| author | Duan, Naibin Bai, Yang Sun, Honghe Wang, Nan Ma, Yumin Li, Mingjun Wang, Xin Jiao, Chen Legall, Noah Mao, Linyong Wan, Sibao Wang, Kun He, Tianming Feng, Shouqian Zhang, Zongying Mao, Zhiquan Shen, Xiang Chen, Xiaoliu Jiang, Yuanmao Wu, Shujing Yin, Chengmiao Ge, Shunfeng Yang, Long Jiang, Shenghui Xu, Haifeng Liu, Jingxuan Wang, Deyun Qu, Changzhi Wang, Yicheng Zuo, Weifang Xiang, Li Liu, Chang Zhang, Daoyuan Gao, Yuan Xu, Yimin Xu, Kenong Chao, Thomas Fazio, Gennaro Shu, Huairui Zhong, Gan-Yuan Cheng, Lailiang Fei, Zhangjun Chen, Xuesen |
| author_facet | Duan, Naibin Bai, Yang Sun, Honghe Wang, Nan Ma, Yumin Li, Mingjun Wang, Xin Jiao, Chen Legall, Noah Mao, Linyong Wan, Sibao Wang, Kun He, Tianming Feng, Shouqian Zhang, Zongying Mao, Zhiquan Shen, Xiang Chen, Xiaoliu Jiang, Yuanmao Wu, Shujing Yin, Chengmiao Ge, Shunfeng Yang, Long Jiang, Shenghui Xu, Haifeng Liu, Jingxuan Wang, Deyun Qu, Changzhi Wang, Yicheng Zuo, Weifang Xiang, Li Liu, Chang Zhang, Daoyuan Gao, Yuan Xu, Yimin Xu, Kenong Chao, Thomas Fazio, Gennaro Shu, Huairui Zhong, Gan-Yuan Cheng, Lailiang Fei, Zhangjun Chen, Xuesen |
| author_sort | Duan, Naibin |
| collection | PubMed |
| description | Human selection has reshaped crop genomes. Here we report an apple genome variation map generated through genome sequencing of 117 diverse accessions. A comprehensive model of apple speciation and domestication along the Silk Road is proposed based on evidence from diverse genomic analyses. Cultivated apples likely originate from Malus sieversii in Kazakhstan, followed by intensive introgressions from M. sylvestris. M. sieversii in Xinjiang of China turns out to be an “ancient” isolated ecotype not directly contributing to apple domestication. We have identified selective sweeps underlying quantitative trait loci/genes of important fruit quality traits including fruit texture and flavor, and provide evidences supporting a model of apple fruit size evolution comprising two major events with one occurring prior to domestication and the other during domestication. This study outlines the genetic basis of apple domestication and evolution, and provides valuable information for facilitating marker-assisted breeding and apple improvement. |
| format | Online Article Text |
| id | pubmed-5557836 |
| institution | National Center for Biotechnology Information |
| language | English |
| publishDate | 2017 |
| publisher | Nature Publishing Group UK |
| record_format | MEDLINE/PubMed |
| spelling | pubmed-55578362017-08-17 Genome re-sequencing reveals the history of apple and supports a two-stage model for fruit enlargement Duan, Naibin Bai, Yang Sun, Honghe Wang, Nan Ma, Yumin Li, Mingjun Wang, Xin Jiao, Chen Legall, Noah Mao, Linyong Wan, Sibao Wang, Kun He, Tianming Feng, Shouqian Zhang, Zongying Mao, Zhiquan Shen, Xiang Chen, Xiaoliu Jiang, Yuanmao Wu, Shujing Yin, Chengmiao Ge, Shunfeng Yang, Long Jiang, Shenghui Xu, Haifeng Liu, Jingxuan Wang, Deyun Qu, Changzhi Wang, Yicheng Zuo, Weifang Xiang, Li Liu, Chang Zhang, Daoyuan Gao, Yuan Xu, Yimin Xu, Kenong Chao, Thomas Fazio, Gennaro Shu, Huairui Zhong, Gan-Yuan Cheng, Lailiang Fei, Zhangjun Chen, Xuesen Nat Commun Article Human selection has reshaped crop genomes. Here we report an apple genome variation map generated through genome sequencing of 117 diverse accessions. A comprehensive model of apple speciation and domestication along the Silk Road is proposed based on evidence from diverse genomic analyses. Cultivated apples likely originate from Malus sieversii in Kazakhstan, followed by intensive introgressions from M. sylvestris. M. sieversii in Xinjiang of China turns out to be an “ancient” isolated ecotype not directly contributing to apple domestication. We have identified selective sweeps underlying quantitative trait loci/genes of important fruit quality traits including fruit texture and flavor, and provide evidences supporting a model of apple fruit size evolution comprising two major events with one occurring prior to domestication and the other during domestication. This study outlines the genetic basis of apple domestication and evolution, and provides valuable information for facilitating marker-assisted breeding and apple improvement. Nature Publishing Group UK 2017-08-15 /pmc/articles/PMC5557836/ /pubmed/28811498 http://dx.doi.org/10.1038/s41467-017-00336-7 Text en © The Author(s) 2017 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
| spellingShingle | Article Duan, Naibin Bai, Yang Sun, Honghe Wang, Nan Ma, Yumin Li, Mingjun Wang, Xin Jiao, Chen Legall, Noah Mao, Linyong Wan, Sibao Wang, Kun He, Tianming Feng, Shouqian Zhang, Zongying Mao, Zhiquan Shen, Xiang Chen, Xiaoliu Jiang, Yuanmao Wu, Shujing Yin, Chengmiao Ge, Shunfeng Yang, Long Jiang, Shenghui Xu, Haifeng Liu, Jingxuan Wang, Deyun Qu, Changzhi Wang, Yicheng Zuo, Weifang Xiang, Li Liu, Chang Zhang, Daoyuan Gao, Yuan Xu, Yimin Xu, Kenong Chao, Thomas Fazio, Gennaro Shu, Huairui Zhong, Gan-Yuan Cheng, Lailiang Fei, Zhangjun Chen, Xuesen Genome re-sequencing reveals the history of apple and supports a two-stage model for fruit enlargement |
| title | Genome re-sequencing reveals the history of apple and supports a two-stage model for fruit enlargement |
| title_full | Genome re-sequencing reveals the history of apple and supports a two-stage model for fruit enlargement |
| title_fullStr | Genome re-sequencing reveals the history of apple and supports a two-stage model for fruit enlargement |
| title_full_unstemmed | Genome re-sequencing reveals the history of apple and supports a two-stage model for fruit enlargement |
| title_short | Genome re-sequencing reveals the history of apple and supports a two-stage model for fruit enlargement |
| title_sort | genome re-sequencing reveals the history of apple and supports a two-stage model for fruit enlargement |
| topic | Article |
| url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5557836/ https://www.ncbi.nlm.nih.gov/pubmed/28811498 http://dx.doi.org/10.1038/s41467-017-00336-7 |
| work_keys_str_mv | AT duannaibin genomeresequencingrevealsthehistoryofappleandsupportsatwostagemodelforfruitenlargement AT baiyang genomeresequencingrevealsthehistoryofappleandsupportsatwostagemodelforfruitenlargement AT sunhonghe genomeresequencingrevealsthehistoryofappleandsupportsatwostagemodelforfruitenlargement AT wangnan genomeresequencingrevealsthehistoryofappleandsupportsatwostagemodelforfruitenlargement AT mayumin genomeresequencingrevealsthehistoryofappleandsupportsatwostagemodelforfruitenlargement AT limingjun genomeresequencingrevealsthehistoryofappleandsupportsatwostagemodelforfruitenlargement AT wangxin genomeresequencingrevealsthehistoryofappleandsupportsatwostagemodelforfruitenlargement AT jiaochen genomeresequencingrevealsthehistoryofappleandsupportsatwostagemodelforfruitenlargement AT legallnoah genomeresequencingrevealsthehistoryofappleandsupportsatwostagemodelforfruitenlargement AT maolinyong genomeresequencingrevealsthehistoryofappleandsupportsatwostagemodelforfruitenlargement AT wansibao genomeresequencingrevealsthehistoryofappleandsupportsatwostagemodelforfruitenlargement AT wangkun genomeresequencingrevealsthehistoryofappleandsupportsatwostagemodelforfruitenlargement AT hetianming genomeresequencingrevealsthehistoryofappleandsupportsatwostagemodelforfruitenlargement AT fengshouqian genomeresequencingrevealsthehistoryofappleandsupportsatwostagemodelforfruitenlargement AT zhangzongying genomeresequencingrevealsthehistoryofappleandsupportsatwostagemodelforfruitenlargement AT maozhiquan genomeresequencingrevealsthehistoryofappleandsupportsatwostagemodelforfruitenlargement AT shenxiang genomeresequencingrevealsthehistoryofappleandsupportsatwostagemodelforfruitenlargement AT chenxiaoliu genomeresequencingrevealsthehistoryofappleandsupportsatwostagemodelforfruitenlargement AT jiangyuanmao genomeresequencingrevealsthehistoryofappleandsupportsatwostagemodelforfruitenlargement AT wushujing genomeresequencingrevealsthehistoryofappleandsupportsatwostagemodelforfruitenlargement AT yinchengmiao genomeresequencingrevealsthehistoryofappleandsupportsatwostagemodelforfruitenlargement AT geshunfeng genomeresequencingrevealsthehistoryofappleandsupportsatwostagemodelforfruitenlargement AT yanglong genomeresequencingrevealsthehistoryofappleandsupportsatwostagemodelforfruitenlargement AT jiangshenghui genomeresequencingrevealsthehistoryofappleandsupportsatwostagemodelforfruitenlargement AT xuhaifeng genomeresequencingrevealsthehistoryofappleandsupportsatwostagemodelforfruitenlargement AT liujingxuan genomeresequencingrevealsthehistoryofappleandsupportsatwostagemodelforfruitenlargement AT wangdeyun genomeresequencingrevealsthehistoryofappleandsupportsatwostagemodelforfruitenlargement AT quchangzhi genomeresequencingrevealsthehistoryofappleandsupportsatwostagemodelforfruitenlargement AT wangyicheng genomeresequencingrevealsthehistoryofappleandsupportsatwostagemodelforfruitenlargement AT zuoweifang genomeresequencingrevealsthehistoryofappleandsupportsatwostagemodelforfruitenlargement AT xiangli genomeresequencingrevealsthehistoryofappleandsupportsatwostagemodelforfruitenlargement AT liuchang genomeresequencingrevealsthehistoryofappleandsupportsatwostagemodelforfruitenlargement AT zhangdaoyuan genomeresequencingrevealsthehistoryofappleandsupportsatwostagemodelforfruitenlargement AT gaoyuan genomeresequencingrevealsthehistoryofappleandsupportsatwostagemodelforfruitenlargement AT xuyimin genomeresequencingrevealsthehistoryofappleandsupportsatwostagemodelforfruitenlargement AT xukenong genomeresequencingrevealsthehistoryofappleandsupportsatwostagemodelforfruitenlargement AT chaothomas genomeresequencingrevealsthehistoryofappleandsupportsatwostagemodelforfruitenlargement AT faziogennaro genomeresequencingrevealsthehistoryofappleandsupportsatwostagemodelforfruitenlargement AT shuhuairui genomeresequencingrevealsthehistoryofappleandsupportsatwostagemodelforfruitenlargement AT zhongganyuan genomeresequencingrevealsthehistoryofappleandsupportsatwostagemodelforfruitenlargement AT chenglailiang genomeresequencingrevealsthehistoryofappleandsupportsatwostagemodelforfruitenlargement AT feizhangjun genomeresequencingrevealsthehistoryofappleandsupportsatwostagemodelforfruitenlargement AT chenxuesen genomeresequencingrevealsthehistoryofappleandsupportsatwostagemodelforfruitenlargement |