Cargando…

Enhancement of Perivascular Spaces in 7 T MR Image using Haar Transform of Non-local Cubes and Block-matching Filtering

Perivascular spaces (PVSs) in brain have a close relationship with typical neurological diseases. The quantitative studies of PVSs are meaningful but usually difficult, due to their thin and weak signals and also background noise in the 7 T brain magnetic resonance images (MRI). To clearly distingui...

Descripción completa

Detalles Bibliográficos
Autores principales: Hou, Yingkun, Park, Sang Hyun, Wang, Qian, Zhang, Jun, Zong, Xiaopeng, Lin, Weili, Shen, Dinggang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5561084/
https://www.ncbi.nlm.nih.gov/pubmed/28819140
http://dx.doi.org/10.1038/s41598-017-09336-5
_version_ 1783257770748805120
author Hou, Yingkun
Park, Sang Hyun
Wang, Qian
Zhang, Jun
Zong, Xiaopeng
Lin, Weili
Shen, Dinggang
author_facet Hou, Yingkun
Park, Sang Hyun
Wang, Qian
Zhang, Jun
Zong, Xiaopeng
Lin, Weili
Shen, Dinggang
author_sort Hou, Yingkun
collection PubMed
description Perivascular spaces (PVSs) in brain have a close relationship with typical neurological diseases. The quantitative studies of PVSs are meaningful but usually difficult, due to their thin and weak signals and also background noise in the 7 T brain magnetic resonance images (MRI). To clearly distinguish the PVSs in the 7 T MRI, we propose a novel PVS enhancement method based on the Haar transform of non-local cubes. Specifically, we extract a certain number of cubes from a small neighbor to form a cube group, and then perform Haar transform on each cube group. The Haar transform coefficients are processed using a nonlinear function to amplify the weak signals relevant to the PVSs and to suppress the noise. The enhanced image is reconstructed using the inverse Haar transform of the processed coefficients. Finally, we perform a block-matching 4D filtering on the enhanced image to further remove any remaining noise, and thus obtain an enhanced and denoised 7 T MRI for PVS segmentation. We apply two existing methods to complete PVS segmentation, i.e., (1) vesselness-thresholding and (2) random forest classification. The experimental results show that the PVS segmentation performances can be significantly improved by using the enhanced and denoised 7 T MRI.
format Online
Article
Text
id pubmed-5561084
institution National Center for Biotechnology Information
language English
publishDate 2017
publisher Nature Publishing Group UK
record_format MEDLINE/PubMed
spelling pubmed-55610842017-08-18 Enhancement of Perivascular Spaces in 7 T MR Image using Haar Transform of Non-local Cubes and Block-matching Filtering Hou, Yingkun Park, Sang Hyun Wang, Qian Zhang, Jun Zong, Xiaopeng Lin, Weili Shen, Dinggang Sci Rep Article Perivascular spaces (PVSs) in brain have a close relationship with typical neurological diseases. The quantitative studies of PVSs are meaningful but usually difficult, due to their thin and weak signals and also background noise in the 7 T brain magnetic resonance images (MRI). To clearly distinguish the PVSs in the 7 T MRI, we propose a novel PVS enhancement method based on the Haar transform of non-local cubes. Specifically, we extract a certain number of cubes from a small neighbor to form a cube group, and then perform Haar transform on each cube group. The Haar transform coefficients are processed using a nonlinear function to amplify the weak signals relevant to the PVSs and to suppress the noise. The enhanced image is reconstructed using the inverse Haar transform of the processed coefficients. Finally, we perform a block-matching 4D filtering on the enhanced image to further remove any remaining noise, and thus obtain an enhanced and denoised 7 T MRI for PVS segmentation. We apply two existing methods to complete PVS segmentation, i.e., (1) vesselness-thresholding and (2) random forest classification. The experimental results show that the PVS segmentation performances can be significantly improved by using the enhanced and denoised 7 T MRI. Nature Publishing Group UK 2017-08-17 /pmc/articles/PMC5561084/ /pubmed/28819140 http://dx.doi.org/10.1038/s41598-017-09336-5 Text en © The Author(s) 2017 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Hou, Yingkun
Park, Sang Hyun
Wang, Qian
Zhang, Jun
Zong, Xiaopeng
Lin, Weili
Shen, Dinggang
Enhancement of Perivascular Spaces in 7 T MR Image using Haar Transform of Non-local Cubes and Block-matching Filtering
title Enhancement of Perivascular Spaces in 7 T MR Image using Haar Transform of Non-local Cubes and Block-matching Filtering
title_full Enhancement of Perivascular Spaces in 7 T MR Image using Haar Transform of Non-local Cubes and Block-matching Filtering
title_fullStr Enhancement of Perivascular Spaces in 7 T MR Image using Haar Transform of Non-local Cubes and Block-matching Filtering
title_full_unstemmed Enhancement of Perivascular Spaces in 7 T MR Image using Haar Transform of Non-local Cubes and Block-matching Filtering
title_short Enhancement of Perivascular Spaces in 7 T MR Image using Haar Transform of Non-local Cubes and Block-matching Filtering
title_sort enhancement of perivascular spaces in 7 t mr image using haar transform of non-local cubes and block-matching filtering
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5561084/
https://www.ncbi.nlm.nih.gov/pubmed/28819140
http://dx.doi.org/10.1038/s41598-017-09336-5
work_keys_str_mv AT houyingkun enhancementofperivascularspacesin7tmrimageusinghaartransformofnonlocalcubesandblockmatchingfiltering
AT parksanghyun enhancementofperivascularspacesin7tmrimageusinghaartransformofnonlocalcubesandblockmatchingfiltering
AT wangqian enhancementofperivascularspacesin7tmrimageusinghaartransformofnonlocalcubesandblockmatchingfiltering
AT zhangjun enhancementofperivascularspacesin7tmrimageusinghaartransformofnonlocalcubesandblockmatchingfiltering
AT zongxiaopeng enhancementofperivascularspacesin7tmrimageusinghaartransformofnonlocalcubesandblockmatchingfiltering
AT linweili enhancementofperivascularspacesin7tmrimageusinghaartransformofnonlocalcubesandblockmatchingfiltering
AT shendinggang enhancementofperivascularspacesin7tmrimageusinghaartransformofnonlocalcubesandblockmatchingfiltering