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Draft genome sequence of an endophytic bacterium, Paenibacillus tyrfis strain SUK123, isolated from Santiria apiculata stem

Here we report the draft genome sequence of an endophytic Paenibacillus tyrfis strain isolated from the Universiti Kebangsaan Malaysia reserve forest, Malaysia. The genome size was approximately 8.04 Mb, and the assembly consisted of 107 scaffolds with 168 contigs, and had a G + C content of 53%. Ph...

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Autores principales: Haruna, Emmanuel, Zin, Noraziah M., Adams, Jonathan M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5565763/
https://www.ncbi.nlm.nih.gov/pubmed/28856101
http://dx.doi.org/10.1016/j.gdata.2017.08.005
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author Haruna, Emmanuel
Zin, Noraziah M.
Adams, Jonathan M.
author_facet Haruna, Emmanuel
Zin, Noraziah M.
Adams, Jonathan M.
author_sort Haruna, Emmanuel
collection PubMed
description Here we report the draft genome sequence of an endophytic Paenibacillus tyrfis strain isolated from the Universiti Kebangsaan Malaysia reserve forest, Malaysia. The genome size was approximately 8.04 Mb, and the assembly consisted of 107 scaffolds with 168 contigs, and had a G + C content of 53%. Phylogenetic analysis of strain SUK123 using the 16S rRNA gene revealed that it belonged to the family Paenibacillaceae with the highest similarity to Paenibacillus elgii SD(T) (99%). Whole genome comparison of SUK123 with related species using average nucleotide identity (ANI) analysis revealed a similarity of 98% to Paenibacillus tyrfis Mst1(T), 94% to Paenibacillus elgii B69(T), 91% to Paenibacillus ehimensis A2(T), 68% to Paenibacillus polymyxa SC2(T) and 69% to Paenibacillus alvei DMS29(T). The draft genome was deposited at the European Nucleotide Archive (PRJEB21373).
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spelling pubmed-55657632017-08-30 Draft genome sequence of an endophytic bacterium, Paenibacillus tyrfis strain SUK123, isolated from Santiria apiculata stem Haruna, Emmanuel Zin, Noraziah M. Adams, Jonathan M. Genom Data Regular Article Here we report the draft genome sequence of an endophytic Paenibacillus tyrfis strain isolated from the Universiti Kebangsaan Malaysia reserve forest, Malaysia. The genome size was approximately 8.04 Mb, and the assembly consisted of 107 scaffolds with 168 contigs, and had a G + C content of 53%. Phylogenetic analysis of strain SUK123 using the 16S rRNA gene revealed that it belonged to the family Paenibacillaceae with the highest similarity to Paenibacillus elgii SD(T) (99%). Whole genome comparison of SUK123 with related species using average nucleotide identity (ANI) analysis revealed a similarity of 98% to Paenibacillus tyrfis Mst1(T), 94% to Paenibacillus elgii B69(T), 91% to Paenibacillus ehimensis A2(T), 68% to Paenibacillus polymyxa SC2(T) and 69% to Paenibacillus alvei DMS29(T). The draft genome was deposited at the European Nucleotide Archive (PRJEB21373). Elsevier 2017-08-17 /pmc/articles/PMC5565763/ /pubmed/28856101 http://dx.doi.org/10.1016/j.gdata.2017.08.005 Text en © 2017 The Authors http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Regular Article
Haruna, Emmanuel
Zin, Noraziah M.
Adams, Jonathan M.
Draft genome sequence of an endophytic bacterium, Paenibacillus tyrfis strain SUK123, isolated from Santiria apiculata stem
title Draft genome sequence of an endophytic bacterium, Paenibacillus tyrfis strain SUK123, isolated from Santiria apiculata stem
title_full Draft genome sequence of an endophytic bacterium, Paenibacillus tyrfis strain SUK123, isolated from Santiria apiculata stem
title_fullStr Draft genome sequence of an endophytic bacterium, Paenibacillus tyrfis strain SUK123, isolated from Santiria apiculata stem
title_full_unstemmed Draft genome sequence of an endophytic bacterium, Paenibacillus tyrfis strain SUK123, isolated from Santiria apiculata stem
title_short Draft genome sequence of an endophytic bacterium, Paenibacillus tyrfis strain SUK123, isolated from Santiria apiculata stem
title_sort draft genome sequence of an endophytic bacterium, paenibacillus tyrfis strain suk123, isolated from santiria apiculata stem
topic Regular Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5565763/
https://www.ncbi.nlm.nih.gov/pubmed/28856101
http://dx.doi.org/10.1016/j.gdata.2017.08.005
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