Cargando…

MatCol: a tool to measure fluorescence signal colocalisation in biological systems

Protein colocalisation is often studied using pixel intensity-based coefficients such as Pearson, Manders, Li or Costes. However, these methods cannot be used to study object-based colocalisations in biological systems. Therefore, a novel method is required to automatically identify regions of fluor...

Descripción completa

Detalles Bibliográficos
Autores principales:	Khushi, Matloob, Napier, Christine E., Smyth, Christine M., Reddel, Roger R., Arthur, Jonathan W.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Nature Publishing Group UK 2017
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5566543/ https://www.ncbi.nlm.nih.gov/pubmed/28827650 http://dx.doi.org/10.1038/s41598-017-08786-1

Ejemplares similares

Regression adjusted colocalisation colour mapping (RACC): A novel biological visual analysis method for qualitative colocalisation analysis of 3D fluorescence micrographs
por: Theart, Rensu P., et al.
Publicado: (2019)

Visualising recalcitrance by colocalisation of cellulase, lignin and cellulose in pretreated pine biomass using fluorescence microscopy
por: Donaldson, Lloyd, et al.
Publicado: (2017)

Proteomics profiling of interactome dynamics by colocalisation analysis (COLA)
por: Mardakheh, Faraz K., et al.
Publicado: (2017)

Direct Evidence of Lack of Colocalisation of Fluorescently Labelled Gold Labels Used in Correlative Light Electron Microscopy
por: Miles, Benjamin T., et al.
Publicado: (2017)

Collimation and material science studies (ColMat) at GSI.
por: Stadlmann, J, et al.
Publicado: (2010)

Shh and ZRS enhancer colocalisation is specific to the zone of polarising activity
por: Williamson, Iain, et al.
Publicado: (2016)

ColMat web-site linked to the technical and administrative databases
por: EuCARD, Collaboration
Publicado: (2014)

Eliciting priors and relaxing the single causal variant assumption in colocalisation analyses
por: Wallace, Chris
Publicado: (2020)

A more accurate method for colocalisation analysis allowing for multiple causal variants
por: Wallace, Chris
Publicado: (2021)

Flexible, actin-based ridges colocalise with the β1 integrin on the surface of melanoma cells
por: Poole, K, et al.
Publicado: (2005)

Bayesian Test for Colocalisation between Pairs of Genetic Association Studies Using Summary Statistics
por: Giambartolomei, Claudia, et al.
Publicado: (2014)

Trypanosoma cruzi XRNA granules colocalise with distinct mRNP granules at the nuclear periphery
por: da Costa, Jimena Ferreira, et al.
Publicado: (2018)

Activation-induced colocalisation of SCAMP5 with IFNα in human plasmacytoid dendritic cells
por: Pouw, Juliëtte N, et al.
Publicado: (2022)

Bioinformatic analysis of cis-regulatory interactions between progesterone and estrogen receptors in breast cancer
por: Khushi, Matloob, et al.
Publicado: (2014)

Colocalisation of matrix metalloproteinase-9-mRNA and protein in human colorectal cancer stromal cells.
por: Zeng, Z. S., et al.
Publicado: (1996)

Toxoplasma gondii Chromodomain Protein 1 Binds to Heterochromatin and Colocalises with Centromeres and Telomeres at the Nuclear Periphery
por: Gissot, Mathieu, et al.
Publicado: (2012)

Catalytically active tissue transglutaminase colocalises with Aβ pathology in Alzheimer’s disease mouse models
por: Wilhelmus, Micha M. M., et al.
Publicado: (2016)

Open source tools for management and archiving of digital microscopy data to allow integration with patient pathology and treatment information
por: Khushi, Matloob, et al.
Publicado: (2013)

Binding Sites Analyser (BiSA): Software for Genomic Binding Sites Archiving and Overlap Analysis
por: Khushi, Matloob, et al.
Publicado: (2014)

Colocalisation of CD9 and mortalin in CD9-induced mitotic catastrophe in human prostate cancer cells
por: Zvereff, V, et al.
Publicado: (2007)

In Vivo Colocalisation of oskar mRNA and Trans-Acting Proteins Revealed by Quantitative Imaging of the Drosophila Oocyte
por: Mhlanga, Musa M., et al.
Publicado: (2009)

Poor Homologous Synapsis 1 Interacts with Chromatin but Does Not Colocalise with ASYnapsis 1 during Early Meiosis in Bread Wheat
por: Khoo, Kelvin H. P., et al.
Publicado: (2012)

Biological Characteristics of Verticillium dahliae MAT1-1 and MAT1-2 Strains
por: Liu, Lin, et al.
Publicado: (2021)

Automated classification and characterization of the mitotic spindle following knockdown of a mitosis-related protein
por: Khushi, Matloob, et al.
Publicado: (2017)

Daily rhythmicity in coastal microbial mats
por: Hörnlein, Christine, et al.
Publicado: (2018)

ConanVarvar: a versatile tool for the detection of large syndromic copy number variation from whole-genome sequencing data
por: Gudkov, Mikhail, et al.
Publicado: (2023)

Editorial: Systems Biology and Ecology of Microbial Mat Communities
por: Klotz, Martin G., et al.
Publicado: (2016)

Benchmarking for biomedical natural language processing tasks with a domain specific ALBERT
por: Naseem, Usman, et al.
Publicado: (2022)

TAMMiCol: Tool for analysis of the morphology of microbial colonies
por: Tronnolone, Hayden, et al.
Publicado: (2018)

Integration of disease association and eQTL data using a Bayesian colocalisation approach highlights six candidate causal genes in immune-mediated diseases
por: Guo, Hui, et al.
Publicado: (2015)

The genome sequence of the sea mat, Membranipora membranacea (Linnaeus, 1767)
por: Bishop, John, et al.
Publicado: (2023)

Pressure sensing mat as an objective and sensitive tool for the evaluation of lameness in rabbits
por: von der Ahe, Christin, et al.
Publicado: (2023)

How did socio-demographic status and personal attributes influence compliance to COVID-19 preventive behaviours during the early outbreak in Japan? Lessons for pandemic management
por: Uddin, Shahadat, et al.
Publicado: (2021)

Installation of HiRadMat MultiMat2 experiment
por: Brice, Maximilien
Publicado: (2021)

ATRX represses alternative lengthening of telomeres
por: Napier, Christine E., et al.
Publicado: (2015)

Human Mat2A Uses an Ordered Kinetic Mechanism and Is Stabilized but Not Regulated by Mat2B
por: Bailey, Jonathan, et al.
Publicado: (2021)

Benthic Cyanobacterial Mats in the High Arctic: Multi-Layer Structure and Fluorescence Responses to Osmotic Stress
por: Lionard, Marie, et al.
Publicado: (2012)

Microsensor measurements of hydrogen gas dynamics in cyanobacterial microbial mats
por: Nielsen, Michael, et al.
Publicado: (2015)

ZooMAT : 70 años
Publicado: (2012)

Fluorescence spectroscopy and microscopy as tools for monitoring redox transformations of uranium in biological systems
por: Jones, Debbie L., et al.
Publicado: (2015)

Cannot write session to /tmp/vufind_sessions/sess_avth5etmavjfiupthc5veq2i7n