Cargando…

Genome-wide comparative analysis of H3K4me3 profiles between diploid and allotetraploid cotton to refine genome annotation

Polyploidy is a common evolutionary occurrence in plants. Recently, published genomes of allotetraploid G. hirsutum and its donors G. arboreum and G. raimondii make cotton an accessible polyploid model. This study used chromatin immunoprecipitation with high-throughput sequencing (ChIP-Seq) to inves...

Descripción completa

Detalles Bibliográficos
Autores principales:	You, Qi, Yi, Xin, Zhang, Kang, Wang, Chunchao, Ma, Xuelian, Zhang, Xueyan, Xu, Wenying, Li, Fuguang, Su, Zhen
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Nature Publishing Group UK 2017
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5567255/ https://www.ncbi.nlm.nih.gov/pubmed/28831143 http://dx.doi.org/10.1038/s41598-017-09680-6

Ejemplares similares

Genome-Wide Comparative Analysis of the Phospholipase D Gene Families among Allotetraploid Cotton and Its Diploid Progenitors
por: Tang, Kai, et al.
Publicado: (2016)

Divergence and evolution of cotton bHLH proteins from diploid to allotetraploid
por: Liu, Bingliang, et al.
Publicado: (2018)

Transcriptome analysis of extant cotton progenitors revealed tetraploidization and identified genome-specific single nucleotide polymorphism in diploid and allotetraploid cotton
por: Guan, Xueying, et al.
Publicado: (2014)

Rapid evolutionary divergence of diploid and allotetraploid Gossypium mitochondrial genomes
por: Chen, Zhiwen, et al.
Publicado: (2017)

Development of chromosome-specific markers with high polymorphism for allotetraploid cotton based on genome-wide characterization of simple sequence repeats in diploid cottons (Gossypium arboreum L. and Gossypium raimondii Ulbrich)
por: Lu, Cairui, et al.
Publicado: (2015)

Profiling of H3K4me3 and H3K27me3 and Their Roles in Gene Subfunctionalization in Allotetraploid Cotton
por: Zhang, Aicen, et al.
Publicado: (2021)

ccNET: Database of co-expression networks with functional modules for diploid and polyploid Gossypium
por: You, Qi, et al.
Publicado: (2017)

ccNET: Database of co-expression networks with functional modules for diploid and polyploid Gossypium
por: You, Qi, et al.
Publicado: (2017)

Evolutionary divergence of duplicated genomes in newly described allotetraploid cottons
por: Peng, Renhai, et al.
Publicado: (2022)

BAC libraries construction from the ancestral diploid genomes of the allotetraploid cultivated peanut
por: Guimarães, Patricia M, et al.
Publicado: (2008)

Genomic insights into divergence and dual domestication of cultivated allotetraploid cottons
por: Fang, Lei, et al.
Publicado: (2017)

Multi‐omics mapping of chromatin interaction resolves the fine hierarchy of 3D genome in allotetraploid cotton
por: Huang, Xianhui, et al.
Publicado: (2022)

Genome-Wide Identification and Characterization of the RCI2 Gene Family in Allotetraploid Brassica napus Compared with Its Diploid Progenitors
por: Sun, Weiqi, et al.
Publicado: (2022)

Genome-Wide Identification and Analysis of Class III Peroxidases in Allotetraploid Cotton (Gossypium hirsutum L.) and their Responses to PK Deficiency
por: Duan, Pengfei, et al.
Publicado: (2019)

Phylogenomic Relationships of Diploids and the Origins of Allotetraploids in Dactylorhiza (Orchidaceae)
por: Brandrud, Marie K, et al.
Publicado: (2020)

Refinement of bamboo genome annotations through integrative analyses of transcriptomic and epigenomic data
por: Ma, Xuelian, et al.
Publicado: (2021)

Genome-wide characterization of phospholipase D family genes in allotetraploid peanut and its diploid progenitors revealed their crucial roles in growth and abiotic stress responses
por: Zhang, He, et al.
Publicado: (2023)

Genome-wide identification and functional analysis of the TIFY gene family in response to drought in cotton
por: Zhao, Ge, et al.
Publicado: (2016)

Genome-wide identification and characterization of SnRK2 gene family in cotton (Gossypium hirsutum L.)
por: Liu, Zhao, et al.
Publicado: (2017)

Simultaneous Editing of Two Copies of Gh14-3-3d Confers Enhanced Transgene-Clean Plant Defense Against Verticillium dahliae in Allotetraploid Upland Cotton
por: Zhang, Zhennan, et al.
Publicado: (2018)

Development and mapping of SNP assays in allotetraploid cotton
por: Byers, Robert L., et al.
Publicado: (2012)

Divergent improvement of two cultivated allotetraploid cotton species
por: Fang, Lei, et al.
Publicado: (2021)

Genome-wide analysis and comparison of the DNA-binding one zinc finger gene family in diploid and tetraploid cotton (Gossypium)
por: Li, YuZhe, et al.
Publicado: (2020)

Genetic dissection of an allotetraploid interspecific CSSLs guides interspecific genetics and breeding in cotton
por: Zhu, De, et al.
Publicado: (2020)

High efficient multisites genome editing in allotetraploid cotton (Gossypium hirsutum) using CRISPR/Cas9 system
por: Wang, Pengcheng, et al.
Publicado: (2017)

Structure and Distribution of Centromeric Retrotransposons at Diploid and Allotetraploid Coffea Centromeric and Pericentromeric Regions
por: de Castro Nunes, Renata, et al.
Publicado: (2018)

Genetic factors inherited from both diploid parents interact to affect genome stability and fertility in resynthesized allotetraploid Brassica napus
por: Katche, Elizabeth Ihien, et al.
Publicado: (2023)

Robust CRISPR/Cpf1 (Cas12a)‐mediated genome editing in allotetraploid cotton (Gossypium hirsutum)
por: Li, Bo, et al.
Publicado: (2019)

Analysis of the Complete Mitochondrial Genome Sequence of the Diploid Cotton Gossypium raimondii by Comparative Genomics Approaches
por: Bi, Changwei, et al.
Publicado: (2016)

Genome-specific differential gene expressions in resynthesized Brassica allotetraploids from pair-wise crosses of three cultivated diploids revealed by RNA-seq
por: Zhang, Dawei, et al.
Publicado: (2015)

Insights into the Evolution of Cotton Diploids and Polyploids from Whole-Genome Re-sequencing
por: Page, Justin T., et al.
Publicado: (2013)

Evolution, expression and functional analysis of cultivated allotetraploid cotton DIR genes
por: Liu, Zhengwen, et al.
Publicado: (2021)

Regulatory controls of duplicated gene expression during fiber development in allotetraploid cotton
por: You, Jiaqi, et al.
Publicado: (2023)

Cytoplasmic and Genomic Effects on Non-Meiosis-Driven Genetic Changes in Brassica Hybrids and Allotetraploids from Pairwise Crosses of Three Cultivated Diploids
por: Cui, Cheng, et al.
Publicado: (2013)

Developing Chenopodium ficifolium as a potential B genome diploid model system for genetic characterization and improvement of allotetraploid quinoa (Chenopodium quinoa)
por: Subedi, Madhav, et al.
Publicado: (2021)

Transition to Self-compatibility Associated With Dominant S-allele in a Diploid Siberian Progenitor of Allotetraploid Arabidopsis kamchatica Revealed by Arabidopsis lyrata Genomes
por: Kolesnikova, Uliana K, et al.
Publicado: (2023)

Genome‐wide selection footprints and deleterious variations in young Asian allotetraploid rapeseed
por: Zou, Jun, et al.
Publicado: (2019)

De novo diploid genome assembly for genome-wide structural variant detection
por: Zhang, Lu, et al.
Publicado: (2019)

Systematic Analysis of Differential H3K27me3 and H3K4me3 Deposition in Callus and Seedling Reveals the Epigenetic Regulatory Mechanisms Involved in Callus Formation in Rice
por: Zhao, Nannan, et al.
Publicado: (2020)

Corrigendum to “Analysis of the Complete Mitochondrial Genome Sequence of the Diploid Cotton Gossypium raimondii by Comparative Genomics Approaches”
por: Bi, Changwei, et al.
Publicado: (2019)

Cannot write session to /tmp/vufind_sessions/sess_2nm5q4kcmfkmkl79v9qa626gm5