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Large Scale Metabolic Profiling identifies Novel Steroids linked to Rheumatoid Arthritis
Recent metabolomics studies of Rheumatoid Arthritis (RA) reported few metabolites that were associated with the disease, either due to small cohort sizes or limited coverage of metabolic pathways. Our objective is to identify metabolites associated with RA and its cofounders using a new untargeted m...
Autores principales: | , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5567269/ https://www.ncbi.nlm.nih.gov/pubmed/28831053 http://dx.doi.org/10.1038/s41598-017-05439-1 |
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author | Yousri, Noha A. Bayoumy, Karim Elhaq, Wessam Gad Mohney, Robert P. Emadi, Samar Al Hammoudeh, Mohammed Halabi, Hussein Masri, Basel Badsha, Humeira Uthman, Imad Plenge, Robert Saxena, Richa Suhre, Karsten Arayssi, Thurayya |
author_facet | Yousri, Noha A. Bayoumy, Karim Elhaq, Wessam Gad Mohney, Robert P. Emadi, Samar Al Hammoudeh, Mohammed Halabi, Hussein Masri, Basel Badsha, Humeira Uthman, Imad Plenge, Robert Saxena, Richa Suhre, Karsten Arayssi, Thurayya |
author_sort | Yousri, Noha A. |
collection | PubMed |
description | Recent metabolomics studies of Rheumatoid Arthritis (RA) reported few metabolites that were associated with the disease, either due to small cohort sizes or limited coverage of metabolic pathways. Our objective is to identify metabolites associated with RA and its cofounders using a new untargeted metabolomics platform. Moreover, to investigate the pathomechanism of RA by identifying correlations between RA-associated metabolites. 132 RA patients and 104 controls were analyzed for 927 metabolites. Metabolites were tested for association with RA using linear regression. OPLS-DA was used to discriminate RA patients from controls. Gaussian Graphical Models (GGMs) were used to identify correlated metabolites. 32 metabolites are identified as significantly (Bonferroni) associated with RA, including the previously reported metabolites as DHEAS, cortisol and androstenedione and extending that to a larger set of metabolites in the steroid pathway. RA classification using metabolic profiles shows a sensitivity of 91% and specificity of 88%. Steroid levels show variation among the RA patients according to the corticosteroid treatment; lowest in those taking the treatment at the time of the study, higher in those who never took the treatment, and highest in those who took it in the past. Finally, the GGM reflects metabolite relations from the steroidogenesis pathway. |
format | Online Article Text |
id | pubmed-5567269 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-55672692017-09-01 Large Scale Metabolic Profiling identifies Novel Steroids linked to Rheumatoid Arthritis Yousri, Noha A. Bayoumy, Karim Elhaq, Wessam Gad Mohney, Robert P. Emadi, Samar Al Hammoudeh, Mohammed Halabi, Hussein Masri, Basel Badsha, Humeira Uthman, Imad Plenge, Robert Saxena, Richa Suhre, Karsten Arayssi, Thurayya Sci Rep Article Recent metabolomics studies of Rheumatoid Arthritis (RA) reported few metabolites that were associated with the disease, either due to small cohort sizes or limited coverage of metabolic pathways. Our objective is to identify metabolites associated with RA and its cofounders using a new untargeted metabolomics platform. Moreover, to investigate the pathomechanism of RA by identifying correlations between RA-associated metabolites. 132 RA patients and 104 controls were analyzed for 927 metabolites. Metabolites were tested for association with RA using linear regression. OPLS-DA was used to discriminate RA patients from controls. Gaussian Graphical Models (GGMs) were used to identify correlated metabolites. 32 metabolites are identified as significantly (Bonferroni) associated with RA, including the previously reported metabolites as DHEAS, cortisol and androstenedione and extending that to a larger set of metabolites in the steroid pathway. RA classification using metabolic profiles shows a sensitivity of 91% and specificity of 88%. Steroid levels show variation among the RA patients according to the corticosteroid treatment; lowest in those taking the treatment at the time of the study, higher in those who never took the treatment, and highest in those who took it in the past. Finally, the GGM reflects metabolite relations from the steroidogenesis pathway. Nature Publishing Group UK 2017-08-22 /pmc/articles/PMC5567269/ /pubmed/28831053 http://dx.doi.org/10.1038/s41598-017-05439-1 Text en © The Author(s) 2017 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Yousri, Noha A. Bayoumy, Karim Elhaq, Wessam Gad Mohney, Robert P. Emadi, Samar Al Hammoudeh, Mohammed Halabi, Hussein Masri, Basel Badsha, Humeira Uthman, Imad Plenge, Robert Saxena, Richa Suhre, Karsten Arayssi, Thurayya Large Scale Metabolic Profiling identifies Novel Steroids linked to Rheumatoid Arthritis |
title | Large Scale Metabolic Profiling identifies Novel Steroids linked to Rheumatoid Arthritis |
title_full | Large Scale Metabolic Profiling identifies Novel Steroids linked to Rheumatoid Arthritis |
title_fullStr | Large Scale Metabolic Profiling identifies Novel Steroids linked to Rheumatoid Arthritis |
title_full_unstemmed | Large Scale Metabolic Profiling identifies Novel Steroids linked to Rheumatoid Arthritis |
title_short | Large Scale Metabolic Profiling identifies Novel Steroids linked to Rheumatoid Arthritis |
title_sort | large scale metabolic profiling identifies novel steroids linked to rheumatoid arthritis |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5567269/ https://www.ncbi.nlm.nih.gov/pubmed/28831053 http://dx.doi.org/10.1038/s41598-017-05439-1 |
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