RNA-seq assembly and analysis of Garcinia mangostana transcriptome during seed germination

Garcinia mangostana is a tropical fruit plant rich in antioxidant and bears recalcitrant seeds. The extent of water loss and low temperature tolerable by recalcitrant seed varies from regular orthodox seeds. Present study generates transcriptome resources for G. mangostana to postulate potential tra...

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Detalles Bibliográficos
Autores principales: Azlan, Nur Diyana Kamal, Isa, Mohd Noor Mat, Zainal, Zamri
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2017
Materias:
Genetics, Genomics and Molecular Biology
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5567929/
https://www.ncbi.nlm.nih.gov/pubmed/28861452
http://dx.doi.org/10.1016/j.dib.2017.07.064
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author Azlan, Nur Diyana Kamal
Isa, Mohd Noor Mat
Zainal, Zamri
author_facet Azlan, Nur Diyana Kamal
Isa, Mohd Noor Mat
Zainal, Zamri
author_sort Azlan, Nur Diyana Kamal
collection PubMed
description Garcinia mangostana is a tropical fruit plant rich in antioxidant and bears recalcitrant seeds. The extent of water loss and low temperature tolerable by recalcitrant seed varies from regular orthodox seeds. Present study generates transcriptome resources for G. mangostana to postulate potential transcriptome differences between recalcitrant and orthodox seeds during seed germination process. Raw reads of pooled samples used for the assembly have been deposited in genbank accession SRR5412332.
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spelling pubmed-55679292017-08-31 RNA-seq assembly and analysis of Garcinia mangostana transcriptome during seed germination Azlan, Nur Diyana Kamal Isa, Mohd Noor Mat Zainal, Zamri Data Brief Genetics, Genomics and Molecular Biology Garcinia mangostana is a tropical fruit plant rich in antioxidant and bears recalcitrant seeds. The extent of water loss and low temperature tolerable by recalcitrant seed varies from regular orthodox seeds. Present study generates transcriptome resources for G. mangostana to postulate potential transcriptome differences between recalcitrant and orthodox seeds during seed germination process. Raw reads of pooled samples used for the assembly have been deposited in genbank accession SRR5412332. Elsevier 2017-08-02 /pmc/articles/PMC5567929/ /pubmed/28861452 http://dx.doi.org/10.1016/j.dib.2017.07.064 Text en © 2017 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Genetics, Genomics and Molecular Biology
Azlan, Nur Diyana Kamal
Isa, Mohd Noor Mat
Zainal, Zamri
RNA-seq assembly and analysis of Garcinia mangostana transcriptome during seed germination
title RNA-seq assembly and analysis of Garcinia mangostana transcriptome during seed germination
title_full RNA-seq assembly and analysis of Garcinia mangostana transcriptome during seed germination
title_fullStr RNA-seq assembly and analysis of Garcinia mangostana transcriptome during seed germination
title_full_unstemmed RNA-seq assembly and analysis of Garcinia mangostana transcriptome during seed germination
title_short RNA-seq assembly and analysis of Garcinia mangostana transcriptome during seed germination
title_sort rna-seq assembly and analysis of garcinia mangostana transcriptome during seed germination
topic Genetics, Genomics and Molecular Biology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5567929/
https://www.ncbi.nlm.nih.gov/pubmed/28861452
http://dx.doi.org/10.1016/j.dib.2017.07.064
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