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Identification of informative features for predicting proinflammatory potentials of engine exhausts
BACKGROUND: The immunotoxicity of engine exhausts is of high concern to human health due to the increasing prevalence of immune-related diseases. However, the evaluation of immunotoxicity of engine exhausts is currently based on expensive and time-consuming experiments. It is desirable to develop ef...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5568601/ https://www.ncbi.nlm.nih.gov/pubmed/28830522 http://dx.doi.org/10.1186/s12938-017-0355-6 |
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author | Wang, Chia-Chi Lin, Ying-Chi Lin, Yuan-Chung Jhang, Syu-Ruei Tung, Chun-Wei |
author_facet | Wang, Chia-Chi Lin, Ying-Chi Lin, Yuan-Chung Jhang, Syu-Ruei Tung, Chun-Wei |
author_sort | Wang, Chia-Chi |
collection | PubMed |
description | BACKGROUND: The immunotoxicity of engine exhausts is of high concern to human health due to the increasing prevalence of immune-related diseases. However, the evaluation of immunotoxicity of engine exhausts is currently based on expensive and time-consuming experiments. It is desirable to develop efficient methods for immunotoxicity assessment. METHODS: To accelerate the development of safe alternative fuels, this study proposed a computational method for identifying informative features for predicting proinflammatory potentials of engine exhausts. A principal component regression (PCR) algorithm was applied to develop prediction models. The informative features were identified by a sequential backward feature elimination (SBFE) algorithm. RESULTS: A total of 19 informative chemical and biological features were successfully identified by SBFE algorithm. The informative features were utilized to develop a computational method named FS-CBM for predicting proinflammatory potentials of engine exhausts. FS-CBM model achieved a high performance with correlation coefficient values of 0.997 and 0.943 obtained from training and independent test sets, respectively. CONCLUSIONS: The FS-CBM model was developed for predicting proinflammatory potentials of engine exhausts with a large improvement on prediction performance compared with our previous CBM model. The proposed method could be further applied to construct models for bioactivities of mixtures. |
format | Online Article Text |
id | pubmed-5568601 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-55686012017-08-29 Identification of informative features for predicting proinflammatory potentials of engine exhausts Wang, Chia-Chi Lin, Ying-Chi Lin, Yuan-Chung Jhang, Syu-Ruei Tung, Chun-Wei Biomed Eng Online Research BACKGROUND: The immunotoxicity of engine exhausts is of high concern to human health due to the increasing prevalence of immune-related diseases. However, the evaluation of immunotoxicity of engine exhausts is currently based on expensive and time-consuming experiments. It is desirable to develop efficient methods for immunotoxicity assessment. METHODS: To accelerate the development of safe alternative fuels, this study proposed a computational method for identifying informative features for predicting proinflammatory potentials of engine exhausts. A principal component regression (PCR) algorithm was applied to develop prediction models. The informative features were identified by a sequential backward feature elimination (SBFE) algorithm. RESULTS: A total of 19 informative chemical and biological features were successfully identified by SBFE algorithm. The informative features were utilized to develop a computational method named FS-CBM for predicting proinflammatory potentials of engine exhausts. FS-CBM model achieved a high performance with correlation coefficient values of 0.997 and 0.943 obtained from training and independent test sets, respectively. CONCLUSIONS: The FS-CBM model was developed for predicting proinflammatory potentials of engine exhausts with a large improvement on prediction performance compared with our previous CBM model. The proposed method could be further applied to construct models for bioactivities of mixtures. BioMed Central 2017-08-18 /pmc/articles/PMC5568601/ /pubmed/28830522 http://dx.doi.org/10.1186/s12938-017-0355-6 Text en © The Author(s) 2017 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Research Wang, Chia-Chi Lin, Ying-Chi Lin, Yuan-Chung Jhang, Syu-Ruei Tung, Chun-Wei Identification of informative features for predicting proinflammatory potentials of engine exhausts |
title | Identification of informative features for predicting proinflammatory potentials of engine exhausts |
title_full | Identification of informative features for predicting proinflammatory potentials of engine exhausts |
title_fullStr | Identification of informative features for predicting proinflammatory potentials of engine exhausts |
title_full_unstemmed | Identification of informative features for predicting proinflammatory potentials of engine exhausts |
title_short | Identification of informative features for predicting proinflammatory potentials of engine exhausts |
title_sort | identification of informative features for predicting proinflammatory potentials of engine exhausts |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5568601/ https://www.ncbi.nlm.nih.gov/pubmed/28830522 http://dx.doi.org/10.1186/s12938-017-0355-6 |
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